Variant report

Variant	rs28461415
Chromosome Location	chr9:92471821-92471822
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92471723..92473858-chr9:92509785..92511950,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11265925	0.97[EUR][1000 genomes]
rs11265928	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265929	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265930	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265931	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265932	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265933	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265934	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265935	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11265936	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11265937	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11265938	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265941	0.85[EUR][1000 genomes]
rs11265943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11265944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11265947	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11265948	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12375595	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12377271	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12379679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28613326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72752987	1.00[AFR][1000 genomes]
rs72752992	1.00[AFR][1000 genomes]
rs9696711	0.82[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92465800-92507200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:92467800-92477800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:92469200-92472400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:92469600-92474600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:92469800-92476000	Weak transcription	Fetal Lung	lung
6	chr9:92470400-92472000	Weak transcription	Adipose Nuclei	Adipose
7	chr9:92470400-92472000	Weak transcription	Right Ventricle	heart
8	chr9:92470400-92472400	Weak transcription	Right Atrium	heart
9	chr9:92470600-92472000	Weak transcription	Fetal Muscle Leg	muscle
10	chr9:92470600-92472000	Weak transcription	Placenta	Placenta
11	chr9:92471800-92472600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links