Variant report

Variant	rs28463297
Chromosome Location	chr16:58757977-58757978
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12600277	0.93[EUR][1000 genomes]
rs13336275	0.86[ASN][1000 genomes]
rs2304490	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3743573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4784973	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4784974	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4784975	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58703069	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59515227	0.97[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs59574203	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60175435	0.97[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs60561128	0.81[ASN][1000 genomes]
rs73549297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549298	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550809	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73550815	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73550823	0.97[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs8045857	0.93[EUR][1000 genomes]
rs9921474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9921563	0.93[EUR][1000 genomes]
rs9933114	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9934653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758427	chr16:58579005-58876037	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2758650	chr16:58579005-58876037	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv510686	chr16:58646119-58765894	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1065296	chr16:58738198-58837859	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	n/a
5	nsv1065269	chr16:58743487-58972224	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:58738200-58758000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:58738400-58759800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr16:58738400-58766600	Weak transcription	Stomach Mucosa	stomach
4	chr16:58739200-58758000	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr16:58739200-58758000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr16:58739200-58758400	Strong transcription	Primary T cells from cord blood	blood
7	chr16:58739200-58759000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr16:58739200-58759600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr16:58739400-58758400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr16:58739600-58758000	Strong transcription	Fetal Muscle Trunk	muscle
11	chr16:58739600-58758200	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr16:58739600-58758400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr16:58739800-58759200	Strong transcription	Dnd41	blood
14	chr16:58739800-58759800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr16:58740400-58758000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr16:58740400-58759000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr16:58743400-58759000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr16:58745000-58758400	Strong transcription	Left Ventricle	heart
19	chr16:58745200-58758400	Strong transcription	Osteobl	bone
20	chr16:58745400-58758000	Strong transcription	Fetal Intestine Small	intestine
21	chr16:58747800-58767000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr16:58749200-58758000	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr16:58749600-58759000	Strong transcription	Lung	lung
24	chr16:58751000-58758200	Strong transcription	Fetal Stomach	stomach
25	chr16:58752600-58766600	Weak transcription	NHLF	lung
26	chr16:58753000-58766000	Weak transcription	Small Intestine	intestine
27	chr16:58753200-58765600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr16:58753200-58766400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr16:58753200-58766600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr16:58753200-58766800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr16:58753400-58758000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr16:58753400-58758000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr16:58753400-58766400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr16:58754000-58761000	Weak transcription	Pancreas	Pancrea
35	chr16:58754000-58766800	Weak transcription	Esophagus	oesophagus
36	chr16:58754600-58758400	Strong transcription	Primary hematopoietic stem cells	blood
37	chr16:58754600-58758800	Strong transcription	H9 Cell Line	embryonic stem cell
38	chr16:58754800-58758000	Strong transcription	NHEK	skin
39	chr16:58755000-58758000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr16:58755200-58758000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
41	chr16:58755200-58766800	Weak transcription	Fetal Lung	lung
42	chr16:58755400-58761400	Weak transcription	Psoas Muscle	Psoas
43	chr16:58755400-58766800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr16:58755600-58761400	Weak transcription	Fetal Heart	heart
45	chr16:58755600-58764200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr16:58755600-58766400	Weak transcription	Fetal Brain Male	brain
47	chr16:58756200-58761000	Weak transcription	Right Ventricle	heart
48	chr16:58756200-58764200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr16:58756200-58766800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr16:58756200-58766800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links