Variant report

Variant	rs13336275
Chromosome Location	chr16:58776807-58776808
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11643711	0.84[ASN][1000 genomes]
rs11644269	0.85[ASN][1000 genomes]
rs11859128	0.84[ASN][1000 genomes]
rs12596795	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12599522	0.84[ASN][1000 genomes]
rs12925419	0.84[ASN][1000 genomes]
rs12925537	0.84[ASN][1000 genomes]
rs12931903	0.82[ASN][1000 genomes]
rs2013333	0.84[ASN][1000 genomes]
rs2304490	0.86[ASN][1000 genomes]
rs28463297	0.86[ASN][1000 genomes]
rs34295929	0.83[ASN][1000 genomes]
rs3743573	0.86[ASN][1000 genomes]
rs4784054	0.85[ASN][1000 genomes]
rs4784973	0.81[ASN][1000 genomes]
rs4784974	0.86[ASN][1000 genomes]
rs4784975	0.86[ASN][1000 genomes]
rs4784983	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4784988	0.88[ASN][1000 genomes]
rs58703069	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59515227	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59574203	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59707716	0.84[ASN][1000 genomes]
rs60175435	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60561128	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61151106	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72622281	0.84[ASN][1000 genomes]
rs73549297	0.86[ASN][1000 genomes]
rs73549298	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73550809	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73550815	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73550823	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8044439	0.84[ASN][1000 genomes]
rs8052646	0.84[ASN][1000 genomes]
rs9921474	0.86[ASN][1000 genomes]
rs9933114	0.86[ASN][1000 genomes]
rs9934653	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758427	chr16:58579005-58876037	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2758650	chr16:58579005-58876037	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1065296	chr16:58738198-58837859	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	n/a
4	nsv1065269	chr16:58743487-58972224	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:58768600-58781000	Weak transcription	Colonic Mucosa	Colon
2	chr16:58775400-58778200	Weak transcription	HepG2	liver
3	chr16:58776600-58790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links