Variant report

Variant	rs4784983
Chromosome Location	chr16:58825426-58825427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12596795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12599522	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12709011	0.81[ASN][1000 genomes]
rs13336275	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13337355	0.84[ASN][1000 genomes]
rs4784980	0.81[ASN][1000 genomes]
rs4784988	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4784989	0.83[AMR][1000 genomes]
rs58703069	0.84[EUR][1000 genomes]
rs59515227	1.00[EUR][1000 genomes]
rs59574203	0.84[EUR][1000 genomes]
rs59707716	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60175435	1.00[EUR][1000 genomes]
rs60561128	0.93[ASN][1000 genomes]
rs61151106	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72622281	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73549298	0.84[EUR][1000 genomes]
rs73550809	0.84[EUR][1000 genomes]
rs73550815	0.84[EUR][1000 genomes]
rs73550823	1.00[EUR][1000 genomes]
rs73553527	0.81[ASN][1000 genomes]
rs8046937	0.80[ASN][1000 genomes]
rs8052824	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758427	chr16:58579005-58876037	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2758650	chr16:58579005-58876037	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1065296	chr16:58738198-58837859	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	n/a
4	nsv1065269	chr16:58743487-58972224	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv520998	chr16:58807542-58834219	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	esv3393800	chr16:58812500-58840628	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:58824800-58825800	Enhancers	Right Ventricle	heart
2	chr16:58825400-58825600	Enhancers	K562	blood

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