Variant report

Variant	rs28464829
Chromosome Location	chr18:13233017-13233018
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:13229701..13231556-chr18:13232508..13235407,3	MCF-7	breast:
2	chr18:13226398..13229560-chr18:13232125..13236070,6	MCF-7	breast:
3	chr18:13217269..13219226-chr18:13231988..13233808,2	MCF-7	breast:
4	chr18:13216483..13218902-chr18:13232674..13234716,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168675	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9652932	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833591	chr18:13093777-13253748	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv909408	chr18:13122618-13308950	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv909409	chr18:13151544-13240284	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv909410	chr18:13151544-13308950	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13223400-13235400	Weak transcription	Fetal Kidney	kidney
2	chr18:13223600-13235600	Weak transcription	Fetal Intestine Small	intestine
3	chr18:13223600-13241400	Weak transcription	Aorta	Aorta
4	chr18:13223800-13234200	Weak transcription	Liver	Liver
5	chr18:13223800-13259800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr18:13224000-13234800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr18:13224000-13235400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr18:13224000-13259800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr18:13224200-13233400	Weak transcription	HepG2	liver
10	chr18:13224400-13234000	Weak transcription	Pancreas	Pancrea
11	chr18:13224400-13234600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr18:13224400-13235400	Weak transcription	Colon Smooth Muscle	Colon
13	chr18:13224400-13235600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr18:13224400-13242600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr18:13224400-13245400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr18:13224400-13259800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr18:13229400-13243000	Weak transcription	Dnd41	blood
18	chr18:13230600-13240800	Enhancers	Fetal Brain Male	brain
19	chr18:13231200-13233400	Enhancers	Fetal Muscle Leg	muscle
20	chr18:13231400-13234200	Enhancers	Fetal Heart	heart
21	chr18:13231800-13233400	Enhancers	Brain Germinal Matrix	brain
22	chr18:13231800-13233600	Enhancers	Fetal Lung	lung
23	chr18:13231800-13234600	Enhancers	Left Ventricle	heart
24	chr18:13231800-13234800	Enhancers	Right Ventricle	heart
25	chr18:13232000-13233200	Enhancers	Right Atrium	heart
26	chr18:13232000-13233600	Bivalent Enhancer	Fetal Stomach	stomach
27	chr18:13232000-13233600	Enhancers	Gastric	stomach
28	chr18:13232000-13234800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
29	chr18:13232200-13233200	Flanking Active TSS	Brain Cingulate Gyrus	brain
30	chr18:13232400-13233200	Flanking Active TSS	Brain Anterior Caudate	brain
31	chr18:13232400-13233600	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr18:13232600-13233200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr18:13232600-13233200	Genic enhancers	Thymus	Thymus
34	chr18:13232600-13233400	Genic enhancers	Stomach Smooth Muscle	stomach
35	chr18:13232800-13246200	Weak transcription	Psoas Muscle	Psoas
36	chr18:13233000-13233200	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr18:13233000-13233200	Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr18:13233000-13233400	Strong transcription	Primary T cells from cord blood	blood
39	chr18:13233000-13233400	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr18:13233000-13233400	Genic enhancers	Spleen	Spleen
41	chr18:13233000-13233600	Enhancers	Brain Hippocampus Middle	brain
42	chr18:13233000-13233600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr18:13233000-13233600	Genic enhancers	Fetal Thymus	thymus
44	chr18:13233000-13233800	Enhancers	Brain Angular Gyrus	brain
45	chr18:13233000-13235000	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr18:13233000-13235400	Weak transcription	Adipose Nuclei	Adipose
47	chr18:13233000-13236200	Enhancers	Brain Substantia Nigra	brain
48	chr18:13233000-13239600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr18:13233000-13241400	Enhancers	Fetal Brain Female	brain
50	chr18:13233000-13260200	Weak transcription	Colonic Mucosa	Colon

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