Variant report

Variant	rs9652932
Chromosome Location	chr18:13236599-13236600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13217995..13219714-chr18:13236029..13237767,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168675	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28464829	0.95[AFR][1000 genomes]
rs28472980	1.00[AMR][1000 genomes]
rs7237891	1.00[AMR][1000 genomes]
rs9955356	1.00[AMR][1000 genomes]
rs9962366	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833591	chr18:13093777-13253748	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv909408	chr18:13122618-13308950	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv909409	chr18:13151544-13240284	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv909410	chr18:13151544-13308950	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13223600-13241400	Weak transcription	Aorta	Aorta
2	chr18:13223800-13259800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr18:13224000-13259800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr18:13224400-13242600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr18:13224400-13245400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr18:13224400-13259800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr18:13229400-13243000	Weak transcription	Dnd41	blood
8	chr18:13230600-13240800	Enhancers	Fetal Brain Male	brain
9	chr18:13232800-13246200	Weak transcription	Psoas Muscle	Psoas
10	chr18:13233000-13239600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr18:13233000-13241400	Enhancers	Fetal Brain Female	brain
12	chr18:13233000-13260200	Weak transcription	Colonic Mucosa	Colon
13	chr18:13233200-13240600	Enhancers	Brain Anterior Caudate	brain
14	chr18:13233200-13245800	Weak transcription	Right Atrium	heart
15	chr18:13233400-13239600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr18:13233400-13254000	Weak transcription	Spleen	Spleen
17	chr18:13233400-13259000	Weak transcription	Primary T cells from cord blood	blood
18	chr18:13233600-13243000	Weak transcription	Gastric	stomach
19	chr18:13234400-13238400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr18:13234600-13237000	Weak transcription	Left Ventricle	heart
21	chr18:13234800-13236600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr18:13234800-13236600	Weak transcription	Right Ventricle	heart
23	chr18:13234800-13239200	Weak transcription	Liver	Liver
24	chr18:13234800-13239400	Weak transcription	Thymus	Thymus
25	chr18:13234800-13239400	Weak transcription	HepG2	liver
26	chr18:13234800-13240200	Weak transcription	Pancreas	Pancrea
27	chr18:13235400-13236600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr18:13235400-13236800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr18:13235400-13236800	Enhancers	Rectal Smooth Muscle	rectum
30	chr18:13235400-13237200	Enhancers	Fetal Muscle Leg	muscle
31	chr18:13235400-13237400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr18:13235400-13237400	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr18:13235400-13237400	Enhancers	Adipose Nuclei	Adipose
34	chr18:13235400-13237400	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr18:13235600-13237000	Enhancers	Fetal Thymus	thymus
36	chr18:13235600-13237200	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr18:13235600-13237400	Enhancers	Fetal Muscle Trunk	muscle
38	chr18:13235600-13237400	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr18:13235600-13237800	Enhancers	Fetal Heart	heart
40	chr18:13235600-13240600	Enhancers	Brain Hippocampus Middle	brain
41	chr18:13235800-13238600	Weak transcription	Brain Germinal Matrix	brain
42	chr18:13235800-13239400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr18:13235800-13245800	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr18:13236000-13238400	Weak transcription	Brain Angular Gyrus	brain
45	chr18:13236000-13239400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr18:13236000-13239600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr18:13236000-13241200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr18:13236200-13237000	Weak transcription	Brain Substantia Nigra	brain
49	chr18:13236200-13237800	Enhancers	Colon Smooth Muscle	Colon
50	chr18:13236200-13258800	Weak transcription	Fetal Lung	lung

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