Variant report

Variant	rs9955356
Chromosome Location	chr18:13265208-13265209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:13215870..13219529-chr18:13264681..13269874,5	MCF-7	breast:
2	chr18:13246195..13248489-chr18:13263475..13266169,2	MCF-7	breast:
3	chr18:13263986..13266782-chr18:13271778..13275109,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168675	Chromatin interaction
ENSG00000267239	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28472980	1.00[AMR][1000 genomes]
rs7237891	1.00[AMR][1000 genomes]
rs9652932	1.00[AMR][1000 genomes]
rs9962366	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909408	chr18:13122618-13308950	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv909410	chr18:13151544-13308950	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3405323	chr18:13261252-13267450	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13243600-13278200	Weak transcription	Dnd41	blood
2	chr18:13253000-13267800	Weak transcription	Gastric	stomach
3	chr18:13256800-13268400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr18:13258600-13268600	Enhancers	Right Ventricle	heart
5	chr18:13259200-13280000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr18:13259800-13267800	Enhancers	Fetal Brain Male	brain
7	chr18:13260000-13266200	Enhancers	Rectal Smooth Muscle	rectum
8	chr18:13260800-13268200	Weak transcription	Liver	Liver
9	chr18:13261200-13266000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr18:13261200-13266200	Weak transcription	Pancreas	Pancrea
11	chr18:13261200-13268200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr18:13261200-13282200	Weak transcription	Small Intestine	intestine
13	chr18:13261400-13265600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr18:13261400-13266000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr18:13261400-13268000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr18:13261600-13265600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr18:13261600-13265800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr18:13261800-13267000	Weak transcription	Fetal Kidney	kidney
19	chr18:13262000-13267800	Weak transcription	Ovary	ovary
20	chr18:13262200-13265600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr18:13262200-13265600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr18:13262200-13266600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr18:13262200-13268200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr18:13262200-13270000	Weak transcription	Stomach Mucosa	stomach
25	chr18:13262400-13265400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr18:13262400-13265600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr18:13262400-13267200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr18:13262400-13267200	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr18:13262400-13267400	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr18:13262400-13267400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr18:13262400-13267400	Weak transcription	Colonic Mucosa	Colon
32	chr18:13262400-13267600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr18:13262400-13267800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr18:13262800-13266200	Enhancers	Colon Smooth Muscle	Colon
35	chr18:13263200-13266000	Weak transcription	Lung	lung
36	chr18:13263200-13268600	Enhancers	Left Ventricle	heart
37	chr18:13263400-13266200	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr18:13263400-13266200	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr18:13263400-13268600	Enhancers	Right Atrium	heart
40	chr18:13263400-13268800	Enhancers	Fetal Muscle Leg	muscle
41	chr18:13263600-13268200	Weak transcription	Spleen	Spleen
42	chr18:13263800-13269200	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr18:13263800-13269600	Enhancers	Fetal Brain Female	brain
44	chr18:13263800-13272600	Enhancers	Fetal Heart	heart
45	chr18:13264000-13265400	Enhancers	Fetal Muscle Trunk	muscle
46	chr18:13264000-13266400	Enhancers	Brain Anterior Caudate	brain
47	chr18:13264000-13267600	Genic enhancers	Thymus	Thymus
48	chr18:13264000-13268400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr18:13264000-13268600	Flanking Active TSS	Stomach Smooth Muscle	stomach
50	chr18:13264200-13266000	Bivalent Enhancer	Placenta	Placenta

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