Variant report

Variant	rs28465033
Chromosome Location	chr4:149150412-149150413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10012553	1.00[ASN][1000 genomes]
rs10519954	1.00[ASN][1000 genomes]
rs10519955	1.00[ASN][1000 genomes]
rs11721799	1.00[ASN][1000 genomes]
rs11722863	1.00[ASN][1000 genomes]
rs11725509	1.00[ASN][1000 genomes]
rs11727220	1.00[ASN][1000 genomes]
rs17024506	1.00[ASN][1000 genomes]
rs17024565	1.00[ASN][1000 genomes]
rs17024579	1.00[ASN][1000 genomes]
rs28507515	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2883917	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61760312	1.00[ASN][1000 genomes]
rs61761514	1.00[ASN][1000 genomes]
rs6844424	1.00[ASN][1000 genomes]
rs73855940	1.00[ASN][1000 genomes]
rs9997290	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv880245	chr4:149132756-149183374	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149138400-149157800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:149138600-149157200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:149139000-149157200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:149140000-149170800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr4:149144400-149150600	Weak transcription	Liver	Liver
6	chr4:149145200-149150600	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:149145200-149150600	Weak transcription	Fetal Intestine Small	intestine
8	chr4:149146400-149150600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr4:149146400-149157200	Weak transcription	Gastric	stomach
10	chr4:149146400-149157200	Weak transcription	Stomach Mucosa	stomach
11	chr4:149147000-149152200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr4:149150200-149150600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:149150200-149150600	Enhancers	Left Ventricle	heart
14	chr4:149150200-149150800	Enhancers	Lung	lung
15	chr4:149150200-149151600	Enhancers	Pancreas	Pancrea
16	chr4:149150400-149151000	Enhancers	Fetal Intestine Large	intestine
17	chr4:149150400-149151000	Weak transcription	Right Ventricle	heart
18	chr4:149150400-149153400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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