Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10012553	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10519954	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10519955	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11721799	1.00[ASN][1000 genomes]
rs11722863	1.00[ASN][1000 genomes]
rs11725509	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11726964	1.00[CHB][hapmap]
rs11727220	1.00[ASN][1000 genomes]
rs11728254	1.00[CHB][hapmap]
rs1512332	1.00[CHB][hapmap]
rs1512334	1.00[CHB][hapmap]
rs17024506	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17024565	1.00[ASN][1000 genomes]
rs17024579	1.00[ASN][1000 genomes]
rs17024631	1.00[CHB][hapmap]
rs17024633	1.00[CHB][hapmap]
rs17024654	1.00[CHB][hapmap]
rs17024666	1.00[CHB][hapmap]
rs17024683	1.00[CHB][hapmap]
rs28465033	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28507515	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34861534	1.00[CHB][hapmap]
rs61760312	1.00[ASN][1000 genomes]
rs61761514	1.00[ASN][1000 genomes]
rs6831034	1.00[CHB][hapmap]
rs6844424	1.00[ASN][1000 genomes]
rs6857339	1.00[CHB][hapmap]
rs6858581	1.00[CHB][hapmap]
rs73855940	1.00[ASN][1000 genomes]
rs878152	1.00[CHB][hapmap]
rs9997290	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv880245	chr4:149132756-149183374	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149123600-149150200	Weak transcription	Right Ventricle	heart
2	chr4:149138400-149157800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:149138600-149150200	Weak transcription	Ovary	ovary
4	chr4:149138600-149157200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:149138800-149150400	Weak transcription	Fetal Intestine Large	intestine
6	chr4:149139000-149157200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:149140000-149170800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr4:149144400-149150600	Weak transcription	Liver	Liver
9	chr4:149144600-149150200	Weak transcription	Left Ventricle	heart
10	chr4:149145200-149150600	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:149145200-149150600	Weak transcription	Fetal Intestine Small	intestine
12	chr4:149145800-149150000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr4:149146400-149150600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr4:149146400-149157200	Weak transcription	Gastric	stomach
15	chr4:149146400-149157200	Weak transcription	Stomach Mucosa	stomach
16	chr4:149147000-149152200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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