Variant report

Variant	rs1512332
Chromosome Location	chr4:149276949-149276950
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10012553	1.00[CHB][hapmap]
rs10519954	1.00[CHB][hapmap]
rs10519955	1.00[CHB][hapmap]
rs11725509	1.00[CHB][hapmap]
rs11726964	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11728254	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11730006	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12506373	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509783	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024506	1.00[CHB][hapmap]
rs17024631	1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17024633	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024666	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024683	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2883917	1.00[CHB][hapmap]
rs34861534	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6829058	1.00[ASN][1000 genomes]
rs6831034	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6857339	1.00[CHB][hapmap];0.88[YRI][hapmap];1.00[ASN][1000 genomes]
rs6858581	1.00[CHB][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs878152	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1019350	chr4:149232430-149282117	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3584816	chr4:149254670-149293317	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149267000-149280600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:149267800-149282000	Weak transcription	Right Ventricle	heart
3	chr4:149268200-149288000	Weak transcription	Small Intestine	intestine
4	chr4:149272000-149280400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr4:149272000-149282000	Weak transcription	Psoas Muscle	Psoas
6	chr4:149276200-149277000	Flanking Active TSS	HUVEC	blood vessel
7	chr4:149276200-149277200	Enhancers	Brain Hippocampus Middle	brain
8	chr4:149276200-149277400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr4:149276200-149278200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr4:149276200-149278200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:149276200-149278400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr4:149276400-149277200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr4:149276400-149277200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr4:149276400-149277200	Enhancers	Colon Smooth Muscle	Colon
15	chr4:149276400-149278200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr4:149276600-149277000	Enhancers	Primary T cells fromperipheralblood	blood
17	chr4:149276600-149277000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
18	chr4:149276600-149277000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr4:149276600-149277000	Enhancers	Fetal Lung	lung
20	chr4:149276600-149277000	Enhancers	Left Ventricle	heart
21	chr4:149276600-149277000	Enhancers	Pancreas	Pancrea
22	chr4:149276600-149277000	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr4:149276600-149277000	Enhancers	Right Atrium	heart
24	chr4:149276600-149277000	Enhancers	Stomach Smooth Muscle	stomach
25	chr4:149276600-149277200	Enhancers	Gastric	stomach
26	chr4:149276600-149277200	Enhancers	Ovary	ovary
27	chr4:149276600-149277200	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr4:149276600-149277200	Enhancers	Stomach Mucosa	stomach
29	chr4:149276600-149277800	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr4:149276600-149278200	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr4:149276800-149277000	Enhancers	Liver	Liver
32	chr4:149276800-149277000	Enhancers	Colonic Mucosa	Colon
33	chr4:149276800-149277200	Enhancers	Adipose Nuclei	Adipose
34	chr4:149276800-149277600	Enhancers	Duodenum Smooth Muscle	Duodenum

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