Variant report

Variant	rs34861534
Chromosome Location	chr4:149238314-149238315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10012553	1.00[CHB][hapmap]
rs10519954	1.00[CHB][hapmap]
rs10519955	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs11725509	1.00[CHB][hapmap]
rs11726964	1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[ASN][1000 genomes]
rs11728254	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11730006	1.00[ASN][1000 genomes]
rs12506373	1.00[ASN][1000 genomes]
rs12507494	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12509783	1.00[ASN][1000 genomes]
rs1512332	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1512334	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17024506	1.00[CHB][hapmap]
rs17024631	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024633	1.00[CHB][hapmap];0.87[GIH][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024654	1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[ASN][1000 genomes]
rs17024666	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17024683	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2883917	1.00[CHB][hapmap]
rs6829058	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6831034	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6857339	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6858581	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs878152	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1019350	chr4:149232430-149282117	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149235000-149266800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:149237000-149249600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr4:149237800-149246200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links