Variant report
| Variant | rs2846705 |
|---|---|
| Chromosome Location | chr11:102574108-102574109 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10791590 | 0.88[ASN][1000 genomes] |
| rs1276257 | 0.81[ASN][1000 genomes] |
| rs1276274 | 0.88[ASN][1000 genomes] |
| rs1276275 | 0.88[ASN][1000 genomes] |
| rs1276285 | 0.87[ASN][1000 genomes] |
| rs1276286 | 0.95[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs1276287 | 0.95[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs1276288 | 0.86[ASN][1000 genomes] |
| rs1276289 | 0.95[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs1296594 | 0.88[ASN][1000 genomes] |
| rs1298740 | 0.88[ASN][1000 genomes] |
| rs1300202 | 0.82[ASN][1000 genomes] |
| rs1940473 | 0.87[ASN][1000 genomes] |
| rs1940478 | 0.86[ASN][1000 genomes] |
| rs1940480 | 0.95[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs2155554 | 0.86[ASN][1000 genomes] |
| rs2155555 | 0.88[ASN][1000 genomes] |
| rs2464362 | 0.86[ASN][1000 genomes] |
| rs2464363 | 0.88[ASN][1000 genomes] |
| rs2509243 | 0.86[ASN][1000 genomes] |
| rs2509245 | 0.86[ASN][1000 genomes] |
| rs2701963 | 0.86[ASN][1000 genomes] |
| rs2701991 | 0.82[ASN][1000 genomes] |
| rs2701992 | 0.83[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2701993 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs2701995 | 0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2845674 | 0.95[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs2846365 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs2846701 | 0.90[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs2846704 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs2846723 | 0.95[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs2846724 | 0.95[CHB][hapmap];0.81[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4121366 | 0.95[CHB][hapmap];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832252 | chr11:102445479-102627879 | Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1037454 | chr11:102487521-102601233 | Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv541156 | chr11:102487521-102601233 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:102572600-102579800 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
