Variant report

Variant	rs28471676
Chromosome Location	chr5:35475952-35475953
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57996618	1.00[AMR][1000 genomes]
rs58849186	1.00[AMR][1000 genomes]
rs58852689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60410002	1.00[AMR][1000 genomes]
rs73086400	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73088308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73088319	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73088321	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018541	chr5:35446209-35491185	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030395	chr5:35446516-35491185	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35469200-35479400	Weak transcription	Pancreas	Pancrea
2	chr5:35471600-35476400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:35474000-35478000	Weak transcription	NHDF-Ad	bronchial
4	chr5:35475400-35480400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr5:35475800-35477000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr5:35475800-35477200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr5:35475800-35478000	Enhancers	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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