Variant report

Variant	rs73088321
Chromosome Location	chr5:35483574-35483575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35478172..35480721-chr5:35482936..35485324,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28471676	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57996618	1.00[AMR][1000 genomes]
rs58849186	1.00[AMR][1000 genomes]
rs58852689	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60410002	1.00[AMR][1000 genomes]
rs73086400	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73088308	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73088319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018541	chr5:35446209-35491185	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030395	chr5:35446516-35491185	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35479800-35488600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:35480200-35483800	Weak transcription	Colon Smooth Muscle	Colon
3	chr5:35481600-35483800	Enhancers	HepG2	liver
4	chr5:35481600-35485200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr5:35482000-35485000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr5:35482000-35485200	Enhancers	Fetal Kidney	kidney
7	chr5:35482200-35484800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:35482200-35485000	Enhancers	Primary hematopoietic stem cells	blood
9	chr5:35482400-35484600	Enhancers	Fetal Lung	lung
10	chr5:35482400-35485000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr5:35482400-35485200	Enhancers	Fetal Intestine Large	intestine
12	chr5:35482400-35486200	Enhancers	Liver	Liver
13	chr5:35482600-35486200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr5:35482800-35484800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:35482800-35485600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr5:35482800-35486800	Weak transcription	Esophagus	oesophagus
17	chr5:35483000-35486800	Weak transcription	Ovary	ovary
18	chr5:35483200-35483600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr5:35483200-35483800	Weak transcription	Fetal Stomach	stomach
20	chr5:35483200-35484400	Weak transcription	Fetal Intestine Small	intestine
21	chr5:35483200-35484600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:35483400-35483600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr5:35483400-35483800	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr5:35483400-35484800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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