Variant report

Variant	rs28474829
Chromosome Location	chr4:85011006-85011007
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10000602	1.00[AMR][1000 genomes]
rs10005296	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10011759	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10017587	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10017590	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10024091	1.00[AMR][1000 genomes]
rs10028218	1.00[AMR][1000 genomes]
rs17007925	1.00[AMR][1000 genomes]
rs28367451	1.00[AMR][1000 genomes]
rs28407181	1.00[AMR][1000 genomes]
rs28452690	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28488271	1.00[AMR][1000 genomes]
rs28513758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28527404	1.00[AMR][1000 genomes]
rs28533009	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28535261	1.00[AMR][1000 genomes]
rs28569232	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28587800	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28715126	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9998525	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv916422	chr4:84965304-85145657	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv524354	chr4:85006975-85215142	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85009400-85015000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:85010800-85012800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:85011000-85011400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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