Variant report

Variant	rs28535261
Chromosome Location	chr4:84841399-84841400
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10000602	1.00[AMR][1000 genomes]
rs10005296	1.00[AMR][1000 genomes]
rs10011759	1.00[AMR][1000 genomes]
rs10017587	1.00[AMR][1000 genomes]
rs10017590	1.00[AMR][1000 genomes]
rs10024091	1.00[AMR][1000 genomes]
rs10028218	1.00[AMR][1000 genomes]
rs17007925	1.00[AMR][1000 genomes]
rs28367451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28371055	1.00[AMR][1000 genomes]
rs28407181	1.00[AMR][1000 genomes]
rs28452690	1.00[AMR][1000 genomes]
rs28474829	1.00[AMR][1000 genomes]
rs28488271	1.00[AMR][1000 genomes]
rs28513758	1.00[AMR][1000 genomes]
rs28527404	1.00[AMR][1000 genomes]
rs28533009	1.00[AMR][1000 genomes]
rs28569232	1.00[AMR][1000 genomes]
rs28587800	1.00[AMR][1000 genomes]
rs28715126	1.00[AMR][1000 genomes]
rs9968305	1.00[AMR][1000 genomes]
rs9998525	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv879513	chr4:84612373-84905452	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84837400-84842800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:84840200-84842800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:84841000-84841400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
4	chr4:84841200-84841800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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