The 2.0 version of rSNPBase

Variant report

Variant rs28476564
Chromosome Location chr15:52024506-52024507
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52013600-52028200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
2 chr15:52013600-52028400 Weak transcription Fetal Brain Female brain
3 chr15:52013600-52028800 Weak transcription Fetal Muscle Trunk muscle
4 chr15:52019000-52028200 Weak transcription Brain Substantia Nigra brain
5 chr15:52020000-52028800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr15:52020200-52028000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr15:52020200-52029000 Weak transcription NH-A brain
8 chr15:52020400-52028000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
9 chr15:52022400-52026000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
10 chr15:52022600-52025400 Enhancers Small Intestine intestine
11 chr15:52023000-52024600 Enhancers Fetal Adrenal Gland Adrenal Gland
12 chr15:52023000-52024600 Flanking Active TSS Skeletal Muscle Female skeletal muscle
13 chr15:52023000-52025000 Flanking Active TSS Primary neutrophils fromperipheralblood blood
14 chr15:52023000-52025000 Flanking Active TSS Primary T helper cells PMA-I stimulated --
15 chr15:52023000-52025200 Flanking Active TSS Dnd41 blood
16 chr15:52023000-52025400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr15:52023200-52024600 Flanking Active TSS Primary hematopoietic stem cells blood
18 chr15:52023200-52024600 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
19 chr15:52023200-52024600 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
20 chr15:52023200-52024600 Flanking Active TSS Duodenum Smooth Muscle Duodenum
21 chr15:52023200-52025200 Flanking Active TSS Primary B cells from cord blood blood
22 chr15:52023200-52025200 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
23 chr15:52023200-52025200 Flanking Active TSS Monocytes-CD14+_RO01746 blood
24 chr15:52023400-52024600 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
25 chr15:52023400-52024600 Flanking Active TSS Primary T helper cells fromperipheralblood blood
26 chr15:52023400-52024600 Flanking Active TSS Duodenum Mucosa Duodenum
27 chr15:52023400-52024600 Enhancers NHDF-Ad bronchial
28 chr15:52023400-52024800 Enhancers Brain Cingulate Gyrus brain
29 chr15:52023600-52024600 Flanking Active TSS IMR90 fetal lung fibroblasts Cell Line lung
30 chr15:52023600-52024600 Flanking Active TSS Primary B cells from peripheral blood blood
31 chr15:52023600-52024600 Enhancers Fetal Muscle Leg muscle
32 chr15:52023600-52024600 Flanking Active TSS Rectal Smooth Muscle rectum
33 chr15:52023600-52024600 Flanking Active TSS Skeletal Muscle Male skeletal muscle
34 chr15:52023600-52024600 Flanking Active TSS Stomach Smooth Muscle stomach
35 chr15:52023600-52024800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
36 chr15:52023600-52025000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr15:52023600-52028200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
38 chr15:52023800-52024600 Flanking Active TSS Adipose Nuclei Adipose
39 chr15:52023800-52025000 Enhancers Brain Angular Gyrus brain
40 chr15:52023800-52025400 Enhancers Sigmoid Colon Sigmoid Colon
41 chr15:52024000-52024600 Enhancers Breast Myoepithelial Primary Cells Breast
42 chr15:52024000-52024600 Genic enhancers Fetal Stomach stomach
43 chr15:52024000-52024600 Enhancers Gastric stomach
44 chr15:52024000-52024800 Enhancers Placenta Placenta
45 chr15:52024000-52025000 Enhancers Pancreas Pancrea
46 chr15:52024000-52025400 Enhancers Esophagus oesophagus
47 chr15:52024200-52024600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr15:52024200-52024600 Flanking Active TSS Primary T cells fromperipheralblood blood
49 chr15:52024200-52024600 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
50 chr15:52024200-52024600 Flanking Active TSS Primary T helper naive cells from peripheral blood blood

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Last update: Aug 31, 2015