Variant report

Variant	rs28477632
Chromosome Location	chr21:39937882-39937883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10483047	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12329687	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2836491	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2836493	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2836496	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2836505	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2836522	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28479390	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4816598	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9808818	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9975915	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9978340	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9979462	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9980455	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9981003	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751930	chr21:39917180-39956061	Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39929000-39946800	Weak transcription	Aorta	Aorta
2	chr21:39932200-39940600	Weak transcription	Gastric	stomach
3	chr21:39932400-39938800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr21:39934600-39939000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr21:39937400-39938800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr21:39937800-39939000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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