Variant report

Variant	rs9975915
Chromosome Location	chr21:39943270-39943271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10483047	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12329687	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2836491	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2836493	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2836496	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2836505	0.92[EUR][1000 genomes]
rs2836522	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28477632	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28479390	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4816598	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9808818	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9978340	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9979462	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9980455	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9981003	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751930	chr21:39917180-39956061	Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39929000-39946800	Weak transcription	Aorta	Aorta
2	chr21:39942200-39955200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr21:39942600-39946800	Weak transcription	Fetal Stomach	stomach
4	chr21:39943200-39946200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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