Variant report

Variant	rs28479653
Chromosome Location	chr4:26578240-26578241
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PBX3	chr4:26577681-26578296	SK-N-SH	brain:	n/a	n/a
2	TEAD4	chr4:26577767-26578464	ECC-1	luminal epithelium:	n/a	n/a
3	ARID3A	chr4:26578105-26578344	HepG2	liver:	n/a	n/a
4	RCOR1	chr4:26577952-26578254	K562	blood:	n/a	n/a
5	TEAD4	chr4:26577999-26578512	HepG2	liver:	n/a	n/a
6	HNF4A	chr4:26578069-26578367	HepG2	liver:	n/a	chr4:26578252-26578264 chr4:26578252-26578264 chr4:26578250-26578265 chr4:26578250-26578265 chr4:26578250-26578265 chr4:26578250-26578265 chr4:26578251-26578265 chr4:26578250-26578265
7	MAZ	chr4:26577837-26578557	IMR90	lung:	n/a	chr4:26577900-26577909
8	TEAD4	chr4:26577962-26578353	K562	blood:	n/a	n/a
9	GATA3	chr4:26577543-26578347	SK-N-SH	brain:	n/a	chr4:26577899-26577908 chr4:26577847-26577857
10	MAZ	chr4:26578083-26578408	K562	blood:	n/a	n/a
11	GATA3	chr4:26577611-26578314	SK-N-SH	brain:	n/a	chr4:26577899-26577908 chr4:26577847-26577857
12	RCOR1	chr4:26578035-26578261	K562	blood:	n/a	n/a
13	TEAD4	chr4:26577958-26578534	ECC-1	luminal epithelium:	n/a	n/a
14	MAZ	chr4:26578044-26578424	HepG2	liver:	n/a	n/a
15	POLR2A	chr4:26577670-26578269	H1-neurons	neurons:	n/a	n/a
16	HNF4G	chr4:26578111-26578410	HepG2	liver:	n/a	chr4:26578252-26578264 chr4:26578252-26578264 chr4:26578250-26578265 chr4:26578250-26578265 chr4:26578250-26578265 chr4:26578251-26578266 chr4:26578251-26578265 chr4:26578250-26578265
17	HNF4A	chr4:26578059-26578410	HepG2	liver:	n/a	chr4:26578252-26578264 chr4:26578252-26578264 chr4:26578250-26578265 chr4:26578250-26578265 chr4:26578250-26578265 chr4:26578250-26578265 chr4:26578251-26578265 chr4:26578250-26578265
18	PBX3	chr4:26577585-26578347	SK-N-SH	brain:	n/a	n/a
19	TCF12	chr4:26577752-26578348	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
TBC1D19	TF binding region

rs_ID	r²[population]
rs1027153	0.82[AFR][1000 genomes]

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26572000-26585000	Weak transcription	K562	blood
2	chr4:26575200-26585200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:26576600-26582000	Weak transcription	Thymus	Thymus
4	chr4:26577000-26578600	Enhancers	HSMM	muscle
5	chr4:26577000-26579000	Enhancers	Fetal Lung	lung
6	chr4:26577200-26578600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:26577200-26578600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:26577200-26578600	Enhancers	NHLF	lung
9	chr4:26577200-26578600	Enhancers	Osteobl	bone
10	chr4:26577200-26578800	Enhancers	Fetal Stomach	stomach
11	chr4:26577400-26578600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:26577800-26578400	Enhancers	Fetal Intestine Large	intestine
13	chr4:26577800-26579000	Enhancers	HepG2	liver
14	chr4:26578000-26578400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:26578000-26578600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr4:26578000-26578600	Enhancers	Colon Smooth Muscle	Colon
17	chr4:26578000-26578600	Enhancers	Fetal Thymus	thymus
18	chr4:26578000-26578600	Flanking Active TSS	HSMMtube	muscle
19	chr4:26578000-26578800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:26578000-26579400	Enhancers	Fetal Intestine Small	intestine
21	chr4:26578000-26579800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:26578200-26578400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr4:26578200-26578400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:26578200-26578400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:26578200-26578400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:26578200-26578400	Enhancers	Fetal Muscle Leg	muscle
27	chr4:26578200-26578400	Enhancers	NH-A	brain
28	chr4:26578200-26578600	Enhancers	Right Atrium	heart
29	chr4:26578200-26578600	Enhancers	NHDF-Ad	bronchial
30	chr4:26578200-26578800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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