Variant report

Variant	rs1027153
Chromosome Location	chr4:26582447-26582448
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr4:26582423-26582664	HepG2	liver:	n/a	chr4:26582535-26582545

No.	Distal block	Cell Line	Cell type
1	chr4:26579029..26581398-chr4:26581795..26583635,2	K562	blood:
2	chr4:26580852..26583347-chr4:26584249..26586598,3	K562	blood:
3	chr4:26581090..26582592-chr5:177636048..177637603,2	K562	blood:

Variant related genes	Relation type
TBC1D19	TF binding region
ENSG00000109680	Chromatin interaction

rs_ID	r²[population]
rs10008576	1.00[EUR][1000 genomes]
rs10020584	1.00[EUR][1000 genomes]
rs10023756	1.00[EUR][1000 genomes]
rs10025586	1.00[EUR][1000 genomes]
rs10031208	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs10428307	1.00[EUR][1000 genomes]
rs10428308	1.00[EUR][1000 genomes]
rs11937874	1.00[EUR][1000 genomes]
rs11944695	1.00[EUR][1000 genomes]
rs11947882	1.00[EUR][1000 genomes]
rs16878313	1.00[EUR][1000 genomes]
rs28414180	1.00[EUR][1000 genomes]
rs28479653	0.82[AFR][1000 genomes]
rs28766106	1.00[EUR][1000 genomes]
rs28793097	1.00[EUR][1000 genomes]
rs28843988	1.00[EUR][1000 genomes]
rs4285073	0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs4488926	1.00[EUR][1000 genomes]
rs4583745	1.00[EUR][1000 genomes]
rs4594713	1.00[EUR][1000 genomes]
rs57601989	1.00[EUR][1000 genomes]
rs57977934	1.00[EUR][1000 genomes]
rs58733183	1.00[EUR][1000 genomes]
rs60468513	1.00[EUR][1000 genomes]
rs6448468	1.00[EUR][1000 genomes]
rs6823764	1.00[EUR][1000 genomes]
rs6833670	1.00[EUR][1000 genomes]
rs6842481	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs73110909	1.00[EUR][1000 genomes]
rs73114618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114637	1.00[EUR][1000 genomes]
rs73114668	1.00[EUR][1000 genomes]
rs73114683	1.00[EUR][1000 genomes]
rs73810925	1.00[EUR][1000 genomes]
rs7660813	1.00[EUR][1000 genomes]
rs7667400	1.00[EUR][1000 genomes]
rs7669392	0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs7674106	1.00[EUR][1000 genomes]
rs7674362	1.00[EUR][1000 genomes]
rs7674636	1.00[EUR][1000 genomes]
rs7681685	1.00[EUR][1000 genomes]
rs7685499	1.00[EUR][1000 genomes]
rs7686313	1.00[EUR][1000 genomes]
rs7689000	1.00[EUR][1000 genomes]
rs9654108	1.00[EUR][1000 genomes]
rs9990815	1.00[EUR][1000 genomes]
rs9995160	1.00[EUR][1000 genomes]

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26572000-26585000	Weak transcription	K562	blood
2	chr4:26575200-26585200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:26578600-26583400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:26578600-26584000	Weak transcription	NHDF-Ad	bronchial
5	chr4:26578600-26584000	Weak transcription	NHLF	lung
6	chr4:26578600-26584000	Weak transcription	Osteobl	bone
7	chr4:26578600-26584800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:26578600-26585000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:26578800-26584000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr4:26579000-26585000	Weak transcription	NH-A	brain
11	chr4:26579200-26585200	Weak transcription	HSMMtube	muscle
12	chr4:26579400-26584800	Weak transcription	Fetal Intestine Small	intestine
13	chr4:26579400-26585000	Weak transcription	Fetal Intestine Large	intestine
14	chr4:26579800-26585200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:26581800-26582800	Enhancers	Fetal Thymus	thymus
16	chr4:26582000-26582600	Enhancers	Thymus	Thymus
17	chr4:26582400-26585000	Weak transcription	Fetal Lung	lung

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