Variant report

Variant	rs10025586
Chromosome Location	chr4:26642468-26642469
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr4:26642344-26642943	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000265627	TF binding region

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10008576	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10020584	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10023756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10031208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1027153	1.00[EUR][1000 genomes]
rs10428307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10428308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11937874	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11944695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11947882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28414180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28695240	1.00[AMR][1000 genomes]
rs28766106	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28793097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28843988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4285073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4488926	1.00[EUR][1000 genomes]
rs4583745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4594713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57601989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57977934	1.00[EUR][1000 genomes]
rs58733183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60468513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6448468	1.00[EUR][1000 genomes]
rs6823764	1.00[EUR][1000 genomes]
rs6833670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6842481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73110909	1.00[EUR][1000 genomes]
rs73114618	1.00[EUR][1000 genomes]
rs73114637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73810925	1.00[EUR][1000 genomes]
rs7660813	1.00[EUR][1000 genomes]
rs7667400	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7669392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674362	1.00[EUR][1000 genomes]
rs7674636	1.00[EUR][1000 genomes]
rs7681685	1.00[EUR][1000 genomes]
rs7685499	1.00[EUR][1000 genomes]
rs7686313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7689000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9654108	1.00[EUR][1000 genomes]
rs9990815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9995160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26606400-26656600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:26608800-26643600	Weak transcription	Fetal Heart	heart
3	chr4:26609600-26649400	Weak transcription	Psoas Muscle	Psoas
4	chr4:26613800-26657200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:26616600-26662600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:26618200-26657200	Weak transcription	Pancreas	Pancrea
7	chr4:26619600-26645600	Weak transcription	Spleen	Spleen
8	chr4:26620600-26643800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr4:26622000-26643800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:26622400-26645600	Weak transcription	NHLF	lung
11	chr4:26622400-26662400	Weak transcription	Right Ventricle	heart
12	chr4:26623000-26670400	Weak transcription	Gastric	stomach
13	chr4:26625600-26665600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:26626000-26645000	Weak transcription	Brain Substantia Nigra	brain
15	chr4:26627600-26644400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr4:26629000-26644400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr4:26629200-26680800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr4:26629400-26656800	Weak transcription	Lung	lung
19	chr4:26632800-26643800	Weak transcription	Primary B cells from cord blood	blood
20	chr4:26633800-26657000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr4:26633800-26658600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:26634000-26657000	Weak transcription	Brain Hippocampus Middle	brain
23	chr4:26635000-26675200	Weak transcription	NHDF-Ad	bronchial
24	chr4:26636000-26643600	Weak transcription	Liver	Liver
25	chr4:26637600-26649400	Weak transcription	Placenta	Placenta
26	chr4:26638600-26643600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:26638800-26642600	Strong transcription	Osteobl	bone
28	chr4:26638800-26644600	Strong transcription	Muscle Satellite Cultured Cells	--
29	chr4:26639000-26643600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr4:26639200-26642600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:26639200-26642600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr4:26639200-26643400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr4:26639200-26643800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:26639400-26642800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr4:26639600-26643600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr4:26640000-26642600	Strong transcription	Ovary	ovary
37	chr4:26640000-26642800	Strong transcription	Fetal Intestine Large	intestine
38	chr4:26640000-26691400	Weak transcription	Colon Smooth Muscle	Colon
39	chr4:26640400-26651000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr4:26640800-26643400	Weak transcription	HSMM	muscle
41	chr4:26640800-26644400	Weak transcription	Brain Anterior Caudate	brain
42	chr4:26640800-26645000	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr4:26640800-26662800	Weak transcription	NH-A	brain
44	chr4:26641000-26645600	Weak transcription	Adipose Nuclei	Adipose
45	chr4:26641000-26661400	Weak transcription	HSMMtube	muscle
46	chr4:26641000-26662000	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr4:26641000-26664000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr4:26641800-26642600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr4:26641800-26642600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr4:26641800-26642600	Strong transcription	Brain Germinal Matrix	brain

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