Variant report

Variant	rs10023756
Chromosome Location	chr4:26734663-26734664
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26734519..26736508-chr4:26782080..26784600,2	MCF-7	breast:
2	chr4:26730217..26732508-chr4:26733966..26736527,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10008576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10020584	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10031208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1027153	1.00[EUR][1000 genomes]
rs10428307	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10428308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11937874	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs11944695	0.84[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11947882	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28414180	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28695240	1.00[AMR][1000 genomes]
rs28766106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28793097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28843988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4285073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4488926	1.00[EUR][1000 genomes]
rs4583745	0.83[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4594713	0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57601989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57977934	1.00[EUR][1000 genomes]
rs58733183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60468513	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6448468	1.00[EUR][1000 genomes]
rs6823764	1.00[EUR][1000 genomes]
rs6833670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6842481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114618	1.00[EUR][1000 genomes]
rs73114637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7660813	1.00[EUR][1000 genomes]
rs7667400	0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7669392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674362	1.00[EUR][1000 genomes]
rs7674636	1.00[EUR][1000 genomes]
rs7681685	1.00[EUR][1000 genomes]
rs7686313	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7689000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9654108	1.00[EUR][1000 genomes]
rs9990815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9995160	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26696200-26775400	Weak transcription	Brain Germinal Matrix	brain
2	chr4:26705400-26753200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:26709000-26750000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:26711200-26745200	Weak transcription	Fetal Intestine Large	intestine
5	chr4:26711200-26750000	Weak transcription	Adipose Nuclei	Adipose
6	chr4:26711400-26771800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr4:26711600-26746200	Weak transcription	Dnd41	blood
8	chr4:26716200-26750200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:26716800-26748400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr4:26718000-26754400	Weak transcription	Fetal Muscle Leg	muscle
11	chr4:26719200-26735400	Weak transcription	Fetal Brain Male	brain
12	chr4:26719200-26736200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:26719200-26743200	Weak transcription	NHLF	lung
14	chr4:26719200-26744400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:26719400-26780800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:26719600-26749800	Weak transcription	HMEC	breast
17	chr4:26720400-26750000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:26722200-26743600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:26722400-26734800	Weak transcription	Brain Hippocampus Middle	brain
20	chr4:26722600-26748800	Weak transcription	Primary B cells from cord blood	blood
21	chr4:26722600-26758800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr4:26723000-26744800	Weak transcription	Brain Anterior Caudate	brain
23	chr4:26723400-26781000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr4:26723600-26764200	Weak transcription	Fetal Intestine Small	intestine
25	chr4:26724000-26772000	Weak transcription	Brain Angular Gyrus	brain
26	chr4:26725800-26734800	Weak transcription	Spleen	Spleen
27	chr4:26726400-26744600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr4:26726600-26738400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr4:26726800-26734800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr4:26726800-26736400	Weak transcription	Primary T cells from cord blood	blood
31	chr4:26726800-26750200	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr4:26726800-26751000	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr4:26727200-26756600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr4:26727400-26773800	Weak transcription	Left Ventricle	heart
35	chr4:26727400-26775400	Weak transcription	Right Ventricle	heart
36	chr4:26728000-26742400	Weak transcription	Fetal Lung	lung
37	chr4:26729200-26735400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr4:26729200-26743000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr4:26729200-26750200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr4:26731000-26735200	Weak transcription	Lung	lung
41	chr4:26731600-26743800	Weak transcription	HSMM	muscle
42	chr4:26732000-26735000	Strong transcription	Fetal Thymus	thymus
43	chr4:26732600-26743000	Weak transcription	Fetal Stomach	stomach
44	chr4:26732600-26750000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr4:26732600-26773800	Weak transcription	Aorta	Aorta
46	chr4:26732800-26750200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr4:26733000-26735600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr4:26733000-26744400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr4:26733000-26744800	Weak transcription	Fetal Muscle Trunk	muscle
50	chr4:26733000-26755000	Weak transcription	NH-A	brain

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