Variant report

Variant	rs6842481
Chromosome Location	chr4:26639495-26639496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10008576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10020584	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10023756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10031208	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1027153	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs10428307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10428308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11937874	1.00[EUR][1000 genomes]
rs11944695	0.91[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11947882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28414180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28695240	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28766106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28793097	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28843988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4285073	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4488926	1.00[EUR][1000 genomes]
rs4583745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4594713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57601989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57977934	1.00[EUR][1000 genomes]
rs58733183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60468513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6448468	1.00[EUR][1000 genomes]
rs6823764	1.00[EUR][1000 genomes]
rs6833670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73110909	1.00[EUR][1000 genomes]
rs73114618	1.00[EUR][1000 genomes]
rs73114637	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73810925	1.00[EUR][1000 genomes]
rs7660813	1.00[EUR][1000 genomes]
rs7667400	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7669392	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674106	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674362	1.00[EUR][1000 genomes]
rs7674636	1.00[EUR][1000 genomes]
rs7681685	1.00[EUR][1000 genomes]
rs7685499	1.00[EUR][1000 genomes]
rs7686313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7689000	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9654108	1.00[EUR][1000 genomes]
rs9990815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9995160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966489	chr4:26600972-26641744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26606400-26656600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:26608800-26643600	Weak transcription	Fetal Heart	heart
3	chr4:26609600-26640000	Weak transcription	Left Ventricle	heart
4	chr4:26609600-26649400	Weak transcription	Psoas Muscle	Psoas
5	chr4:26611200-26639600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr4:26613400-26639600	Weak transcription	Fetal Brain Female	brain
7	chr4:26613800-26657200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:26614000-26640600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:26614200-26641400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr4:26615000-26642000	Weak transcription	Fetal Intestine Small	intestine
11	chr4:26615600-26641800	Weak transcription	Brain Germinal Matrix	brain
12	chr4:26615600-26642000	Weak transcription	Aorta	Aorta
13	chr4:26615800-26640200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr4:26616600-26641800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:26616600-26641800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr4:26616600-26662600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr4:26617200-26642200	Weak transcription	Brain Angular Gyrus	brain
18	chr4:26618000-26640400	Weak transcription	NH-A	brain
19	chr4:26618200-26639800	Weak transcription	Fetal Brain Male	brain
20	chr4:26618200-26640000	Weak transcription	Fetal Intestine Large	intestine
21	chr4:26618200-26657200	Weak transcription	Pancreas	Pancrea
22	chr4:26618400-26642000	Weak transcription	Esophagus	oesophagus
23	chr4:26618600-26640000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:26619600-26639600	Weak transcription	HSMMtube	muscle
25	chr4:26619600-26645600	Weak transcription	Spleen	Spleen
26	chr4:26619800-26640000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr4:26620200-26642200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr4:26620600-26643800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr4:26621200-26642200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr4:26622000-26640600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr4:26622000-26641000	Weak transcription	HMEC	breast
32	chr4:26622000-26642400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr4:26622000-26643800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr4:26622400-26645600	Weak transcription	NHLF	lung
35	chr4:26622400-26662400	Weak transcription	Right Ventricle	heart
36	chr4:26623000-26670400	Weak transcription	Gastric	stomach
37	chr4:26623200-26640400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr4:26623200-26640600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr4:26623200-26642000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:26625600-26665600	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr4:26626000-26642200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr4:26626000-26645000	Weak transcription	Brain Substantia Nigra	brain
43	chr4:26627600-26644400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr4:26628400-26639600	Weak transcription	Fetal Kidney	kidney
45	chr4:26629000-26644400	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr4:26629200-26680800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr4:26629400-26656800	Weak transcription	Lung	lung
48	chr4:26631400-26640000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr4:26632800-26643800	Weak transcription	Primary B cells from cord blood	blood
50	chr4:26633200-26639600	Weak transcription	Brain Anterior Caudate	brain

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