Variant report

Variant	rs6448468
Chromosome Location	chr4:26727119-26727120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26719598..26722564-chr4:26726061..26728071,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10008576	1.00[EUR][1000 genomes]
rs10020584	1.00[EUR][1000 genomes]
rs10023756	1.00[EUR][1000 genomes]
rs10025586	1.00[EUR][1000 genomes]
rs10031208	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1027153	1.00[EUR][1000 genomes]
rs10428307	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10428308	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11937874	1.00[EUR][1000 genomes]
rs11944695	1.00[EUR][1000 genomes]
rs11947882	1.00[EUR][1000 genomes]
rs28414180	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28766106	1.00[EUR][1000 genomes]
rs28793097	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28843988	1.00[EUR][1000 genomes]
rs4285073	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4488926	1.00[EUR][1000 genomes]
rs4583745	1.00[EUR][1000 genomes]
rs4594713	1.00[EUR][1000 genomes]
rs57601989	1.00[EUR][1000 genomes]
rs57977934	1.00[EUR][1000 genomes]
rs58733183	1.00[EUR][1000 genomes]
rs60468513	1.00[EUR][1000 genomes]
rs6823764	1.00[EUR][1000 genomes]
rs6833670	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6842481	1.00[EUR][1000 genomes]
rs73114618	1.00[EUR][1000 genomes]
rs73114637	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73114668	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73114683	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7660813	1.00[EUR][1000 genomes]
rs7667400	1.00[EUR][1000 genomes]
rs7669392	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7674106	1.00[EUR][1000 genomes]
rs7674362	1.00[EUR][1000 genomes]
rs7674636	1.00[EUR][1000 genomes]
rs7681685	1.00[EUR][1000 genomes]
rs7686313	1.00[EUR][1000 genomes]
rs7689000	1.00[EUR][1000 genomes]
rs9654108	1.00[EUR][1000 genomes]
rs9990815	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9995160	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26666800-26732200	Weak transcription	Aorta	Aorta
2	chr4:26681400-26732400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:26684400-26732400	Weak transcription	Fetal Kidney	kidney
4	chr4:26696200-26775400	Weak transcription	Brain Germinal Matrix	brain
5	chr4:26705400-26753200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr4:26709000-26750000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr4:26711200-26745200	Weak transcription	Fetal Intestine Large	intestine
8	chr4:26711200-26750000	Weak transcription	Adipose Nuclei	Adipose
9	chr4:26711400-26771800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:26711600-26746200	Weak transcription	Dnd41	blood
11	chr4:26714600-26728800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:26715600-26732200	Weak transcription	Fetal Stomach	stomach
13	chr4:26716200-26750200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:26716800-26748400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr4:26717600-26732200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr4:26718000-26754400	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:26719200-26735400	Weak transcription	Fetal Brain Male	brain
18	chr4:26719200-26736200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:26719200-26743200	Weak transcription	NHLF	lung
20	chr4:26719200-26744400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr4:26719400-26732400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:26719400-26732600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:26719400-26780800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr4:26719600-26732800	Weak transcription	NHEK	skin
25	chr4:26719600-26749800	Weak transcription	HMEC	breast
26	chr4:26720400-26732600	Weak transcription	NHDF-Ad	bronchial
27	chr4:26720400-26750000	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr4:26721600-26731000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr4:26722000-26730400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr4:26722200-26743600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr4:26722400-26729200	Strong transcription	Muscle Satellite Cultured Cells	--
32	chr4:26722400-26734800	Weak transcription	Brain Hippocampus Middle	brain
33	chr4:26722600-26748800	Weak transcription	Primary B cells from cord blood	blood
34	chr4:26722600-26758800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr4:26723000-26744800	Weak transcription	Brain Anterior Caudate	brain
36	chr4:26723400-26729000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr4:26723400-26781000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr4:26723600-26728800	Weak transcription	Psoas Muscle	Psoas
39	chr4:26723600-26764200	Weak transcription	Fetal Intestine Small	intestine
40	chr4:26723800-26727400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr4:26723800-26728600	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr4:26724000-26772000	Weak transcription	Brain Angular Gyrus	brain
43	chr4:26724200-26729200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr4:26724800-26727200	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr4:26725200-26728200	Weak transcription	Primary B cells from peripheral blood	blood
46	chr4:26725200-26728800	Weak transcription	NH-A	brain
47	chr4:26725200-26729400	Weak transcription	Small Intestine	intestine
48	chr4:26725400-26727200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr4:26725600-26731400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr4:26725800-26727400	Weak transcription	HSMM	muscle

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