Variant report

Variant	rs11944695
Chromosome Location	chr4:26620600-26620601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26617271..26620051-chr4:26620097..26621610,2	MCF-7	breast:
2	chr4:26608170..26609762-chr4:26618195..26620999,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10008576	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10020584	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10023756	0.84[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10031208	0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1027153	1.00[EUR][1000 genomes]
rs10428307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10428308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11937874	1.00[EUR][1000 genomes]
rs11947882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28414180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28695240	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28766106	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28793097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28843988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4285073	0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4488926	1.00[EUR][1000 genomes]
rs4583745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4594713	0.86[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57601989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57977934	1.00[EUR][1000 genomes]
rs58733183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60468513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6448468	1.00[EUR][1000 genomes]
rs6823764	1.00[EUR][1000 genomes]
rs6833670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6842481	0.91[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73110909	1.00[EUR][1000 genomes]
rs73114618	1.00[EUR][1000 genomes]
rs73114637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73810925	1.00[EUR][1000 genomes]
rs7660813	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs7667400	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7669392	0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674106	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674362	1.00[EUR][1000 genomes]
rs7674636	1.00[EUR][1000 genomes]
rs7681685	1.00[EUR][1000 genomes]
rs7685499	1.00[EUR][1000 genomes]
rs7686313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7689000	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9654108	1.00[EUR][1000 genomes]
rs9990815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9995160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966489	chr4:26600972-26641744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26596200-26621000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:26606400-26656600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:26608800-26643600	Weak transcription	Fetal Heart	heart
4	chr4:26609000-26625400	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:26609400-26621400	Weak transcription	NHDF-Ad	bronchial
6	chr4:26609600-26621200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:26609600-26640000	Weak transcription	Left Ventricle	heart
8	chr4:26609600-26649400	Weak transcription	Psoas Muscle	Psoas
9	chr4:26609800-26632400	Weak transcription	Primary B cells from cord blood	blood
10	chr4:26611200-26639600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr4:26611400-26624600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:26613200-26634400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr4:26613400-26639600	Weak transcription	Fetal Brain Female	brain
14	chr4:26613800-26634400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr4:26613800-26657200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:26614000-26624400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:26614000-26633400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr4:26614000-26638800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr4:26614000-26640600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr4:26614200-26641400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr4:26615000-26642000	Weak transcription	Fetal Intestine Small	intestine
22	chr4:26615200-26634200	Weak transcription	Fetal Muscle Leg	muscle
23	chr4:26615400-26638800	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr4:26615600-26621200	Weak transcription	Osteobl	bone
25	chr4:26615600-26641800	Weak transcription	Brain Germinal Matrix	brain
26	chr4:26615600-26642000	Weak transcription	Aorta	Aorta
27	chr4:26615800-26624400	Weak transcription	Dnd41	blood
28	chr4:26615800-26635000	Weak transcription	Thymus	Thymus
29	chr4:26615800-26640200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr4:26616600-26622800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr4:26616600-26628400	Strong transcription	Fetal Thymus	thymus
32	chr4:26616600-26639400	Weak transcription	Adipose Nuclei	Adipose
33	chr4:26616600-26641800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:26616600-26641800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr4:26616600-26662600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr4:26617200-26642200	Weak transcription	Brain Angular Gyrus	brain
37	chr4:26618000-26640400	Weak transcription	NH-A	brain
38	chr4:26618200-26634800	Weak transcription	Ovary	ovary
39	chr4:26618200-26638600	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr4:26618200-26639800	Weak transcription	Fetal Brain Male	brain
41	chr4:26618200-26640000	Weak transcription	Fetal Intestine Large	intestine
42	chr4:26618200-26657200	Weak transcription	Pancreas	Pancrea
43	chr4:26618400-26624800	Weak transcription	HUVEC	blood vessel
44	chr4:26618400-26639200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr4:26618400-26642000	Weak transcription	Esophagus	oesophagus
46	chr4:26618600-26626400	Weak transcription	Fetal Stomach	stomach
47	chr4:26618600-26640000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr4:26618800-26626400	Weak transcription	Rectal Smooth Muscle	rectum
49	chr4:26618800-26627400	Weak transcription	Fetal Kidney	kidney
50	chr4:26619400-26620600	Strong transcription	HSMM	muscle

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