Variant report

Variant	rs7674362
Chromosome Location	chr4:26746830-26746831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26746357..26749229-chr4:26861427..26863393,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109689	Chromatin interaction
ENSG00000240005	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10008576	1.00[EUR][1000 genomes]
rs10020584	1.00[EUR][1000 genomes]
rs10023756	1.00[EUR][1000 genomes]
rs10025586	1.00[EUR][1000 genomes]
rs10031208	1.00[EUR][1000 genomes]
rs1027153	1.00[EUR][1000 genomes]
rs10428307	1.00[EUR][1000 genomes]
rs10428308	1.00[EUR][1000 genomes]
rs10470786	1.00[MEX][hapmap]
rs10805265	1.00[MEX][hapmap]
rs11937874	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs11944695	1.00[EUR][1000 genomes]
rs11947882	1.00[EUR][1000 genomes]
rs166353	1.00[MEX][hapmap]
rs28400305	1.00[MEX][hapmap]
rs28414180	1.00[EUR][1000 genomes]
rs28766106	1.00[EUR][1000 genomes]
rs28793097	1.00[EUR][1000 genomes]
rs28843988	1.00[EUR][1000 genomes]
rs4285073	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs4488926	1.00[EUR][1000 genomes]
rs4583745	0.83[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs4594713	0.83[ASW][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs57601989	1.00[EUR][1000 genomes]
rs57977934	1.00[EUR][1000 genomes]
rs58733183	1.00[EUR][1000 genomes]
rs60468513	1.00[EUR][1000 genomes]
rs6448468	1.00[EUR][1000 genomes]
rs6823764	1.00[EUR][1000 genomes]
rs6833670	1.00[EUR][1000 genomes]
rs6842481	1.00[EUR][1000 genomes]
rs73114618	1.00[EUR][1000 genomes]
rs73114637	1.00[EUR][1000 genomes]
rs73114668	1.00[EUR][1000 genomes]
rs73114683	1.00[EUR][1000 genomes]
rs7660813	1.00[EUR][1000 genomes]
rs7667400	0.83[ASW][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs7669392	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs7672066	1.00[MEX][hapmap]
rs7674106	1.00[EUR][1000 genomes]
rs7674636	1.00[EUR][1000 genomes]
rs7681685	1.00[EUR][1000 genomes]
rs7686313	1.00[EUR][1000 genomes]
rs7689000	1.00[EUR][1000 genomes]
rs9654108	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9990815	1.00[EUR][1000 genomes]
rs9995160	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26696200-26775400	Weak transcription	Brain Germinal Matrix	brain
2	chr4:26705400-26753200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:26709000-26750000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:26711200-26750000	Weak transcription	Adipose Nuclei	Adipose
5	chr4:26711400-26771800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:26716200-26750200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:26716800-26748400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr4:26718000-26754400	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:26719400-26780800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:26719600-26749800	Weak transcription	HMEC	breast
11	chr4:26720400-26750000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr4:26722600-26748800	Weak transcription	Primary B cells from cord blood	blood
13	chr4:26722600-26758800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr4:26723400-26781000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr4:26723600-26764200	Weak transcription	Fetal Intestine Small	intestine
16	chr4:26724000-26772000	Weak transcription	Brain Angular Gyrus	brain
17	chr4:26726800-26750200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr4:26726800-26751000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr4:26727200-26756600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr4:26727400-26773800	Weak transcription	Left Ventricle	heart
21	chr4:26727400-26775400	Weak transcription	Right Ventricle	heart
22	chr4:26729200-26750200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr4:26732600-26750000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr4:26732600-26773800	Weak transcription	Aorta	Aorta
25	chr4:26732800-26750200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr4:26733000-26755000	Weak transcription	NH-A	brain
27	chr4:26734000-26750000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr4:26734000-26750000	Weak transcription	Osteobl	bone
29	chr4:26734200-26751000	Weak transcription	Thymus	Thymus
30	chr4:26736400-26754200	Weak transcription	Fetal Heart	heart
31	chr4:26737800-26755400	Weak transcription	Right Atrium	heart
32	chr4:26738600-26758400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr4:26743400-26755000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:26743400-26755000	Weak transcription	NHLF	lung
35	chr4:26743800-26751000	Weak transcription	Fetal Stomach	stomach
36	chr4:26743800-26752600	Weak transcription	Psoas Muscle	Psoas
37	chr4:26744000-26750200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr4:26744400-26775400	Weak transcription	Colon Smooth Muscle	Colon
39	chr4:26745000-26749800	Weak transcription	Fetal Thymus	thymus
40	chr4:26745200-26747600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr4:26745200-26748200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr4:26745200-26775400	Weak transcription	Brain Anterior Caudate	brain
43	chr4:26745400-26747600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr4:26745400-26748400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr4:26745400-26750200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr4:26745400-26750400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr4:26745400-26754000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr4:26745600-26748400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr4:26746000-26748000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr4:26746400-26789600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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