Variant report

Variant	rs7667400
Chromosome Location	chr4:26657767-26657768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10008576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10020584	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10023756	0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025586	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10031208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1027153	1.00[EUR][1000 genomes]
rs10428307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10428308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10470786	1.00[MEX][hapmap]
rs10805265	1.00[MEX][hapmap]
rs11937874	0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs11944695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11947882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs166353	1.00[MEX][hapmap]
rs28414180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28695240	1.00[AMR][1000 genomes]
rs28766106	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28793097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28843988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4285073	0.91[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4488926	1.00[EUR][1000 genomes]
rs4583745	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4594713	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57601989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57977934	1.00[EUR][1000 genomes]
rs58733183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60468513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6448468	1.00[EUR][1000 genomes]
rs6823764	1.00[EUR][1000 genomes]
rs6833670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6842481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73110909	1.00[EUR][1000 genomes]
rs73114618	1.00[EUR][1000 genomes]
rs73114637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73810925	1.00[EUR][1000 genomes]
rs7660813	1.00[EUR][1000 genomes]
rs7669392	0.91[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7672066	1.00[MEX][hapmap]
rs7674106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674362	0.83[ASW][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs7674636	1.00[EUR][1000 genomes]
rs7681685	1.00[EUR][1000 genomes]
rs7685499	1.00[EUR][1000 genomes]
rs7686313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7689000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9654108	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs9990815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9995160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26616600-26662600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:26622400-26662400	Weak transcription	Right Ventricle	heart
3	chr4:26623000-26670400	Weak transcription	Gastric	stomach
4	chr4:26625600-26665600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:26629200-26680800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr4:26633800-26658600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr4:26635000-26675200	Weak transcription	NHDF-Ad	bronchial
8	chr4:26640000-26691400	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:26640800-26662800	Weak transcription	NH-A	brain
10	chr4:26641000-26661400	Weak transcription	HSMMtube	muscle
11	chr4:26641000-26662000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr4:26641000-26664000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr4:26642000-26662000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:26642400-26659800	Weak transcription	Fetal Brain Male	brain
15	chr4:26642400-26662600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:26642400-26663000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr4:26642400-26666600	Weak transcription	Left Ventricle	heart
18	chr4:26642400-26697400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr4:26642600-26661200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:26642600-26662000	Weak transcription	Osteobl	bone
21	chr4:26642600-26662200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr4:26642600-26662800	Weak transcription	Fetal Kidney	kidney
23	chr4:26642800-26658200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr4:26642800-26680000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:26642800-26680800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr4:26643000-26662200	Weak transcription	Primary T cells from cord blood	blood
27	chr4:26643400-26662000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr4:26644600-26662200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr4:26650000-26661800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:26650200-26661200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr4:26651400-26659400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr4:26656200-26662200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr4:26656600-26658600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr4:26656600-26659000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr4:26656800-26657800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr4:26656800-26658400	ZNF genes & repeats	Fetal Intestine Small	intestine
37	chr4:26656800-26658600	ZNF genes & repeats	Fetal Stomach	stomach
38	chr4:26656800-26658600	ZNF genes & repeats	Fetal Thymus	thymus
39	chr4:26656800-26679200	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr4:26657000-26657800	Strong transcription	Fetal Lung	lung
41	chr4:26657200-26658600	ZNF genes & repeats	Fetal Intestine Large	intestine
42	chr4:26657400-26662000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr4:26657400-26662400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr4:26657400-26662600	Weak transcription	Brain Anterior Caudate	brain
45	chr4:26657400-26663200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr4:26657400-26665000	Weak transcription	Brain Substantia Nigra	brain
47	chr4:26657600-26658200	Weak transcription	Brain Germinal Matrix	brain
48	chr4:26657600-26661200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr4:26657600-26662000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr4:26657600-26662000	Weak transcription	Aorta	Aorta

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