Variant report

Variant	rs60468513
Chromosome Location	chr4:26695033-26695034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10008576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10020584	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10023756	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10031208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1027153	1.00[EUR][1000 genomes]
rs10428307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10428308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11937874	1.00[EUR][1000 genomes]
rs11944695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11947882	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28414180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28695240	1.00[AMR][1000 genomes]
rs28766106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28793097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28843988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4285073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4488926	1.00[EUR][1000 genomes]
rs4583745	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4594713	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57601989	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57977934	1.00[EUR][1000 genomes]
rs58733183	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6448468	1.00[EUR][1000 genomes]
rs6823764	1.00[EUR][1000 genomes]
rs6833670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6842481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114618	1.00[EUR][1000 genomes]
rs73114637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7660813	1.00[EUR][1000 genomes]
rs7667400	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7669392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674362	1.00[EUR][1000 genomes]
rs7674636	1.00[EUR][1000 genomes]
rs7681685	1.00[EUR][1000 genomes]
rs7686313	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7689000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9654108	1.00[EUR][1000 genomes]
rs9990815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9995160	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1822380	chr4:26690284-26726780	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26642400-26697400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:26666800-26732200	Weak transcription	Aorta	Aorta
3	chr4:26681400-26695200	Weak transcription	Lung	lung
4	chr4:26681400-26695400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr4:26681400-26697000	Weak transcription	Esophagus	oesophagus
6	chr4:26681400-26732400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:26681600-26695600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:26681800-26695800	Weak transcription	Brain Germinal Matrix	brain
9	chr4:26681800-26696000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:26681800-26696800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr4:26681800-26718600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:26681800-26724400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr4:26683200-26695600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:26684400-26732400	Weak transcription	Fetal Kidney	kidney
15	chr4:26686200-26696400	Weak transcription	Gastric	stomach
16	chr4:26687000-26727000	Weak transcription	Left Ventricle	heart
17	chr4:26689600-26696600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:26690000-26696800	Weak transcription	NHEK	skin
19	chr4:26691200-26695800	Strong transcription	Fetal Thymus	thymus
20	chr4:26692200-26696800	Weak transcription	Psoas Muscle	Psoas
21	chr4:26692200-26697200	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr4:26692200-26698600	Weak transcription	Primary T cells from cord blood	blood
23	chr4:26692200-26712200	Weak transcription	Brain Hippocampus Middle	brain
24	chr4:26692400-26696400	Weak transcription	Fetal Brain Female	brain
25	chr4:26692400-26726400	Weak transcription	Ovary	ovary
26	chr4:26692800-26699600	Weak transcription	Dnd41	blood
27	chr4:26693000-26697200	Weak transcription	Adipose Nuclei	Adipose
28	chr4:26693000-26711000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr4:26693000-26716000	Weak transcription	HSMM	muscle
30	chr4:26693400-26695800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr4:26693400-26703000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:26693600-26696200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr4:26694000-26695800	Weak transcription	Pancreas	Pancrea
34	chr4:26694200-26695800	Weak transcription	Fetal Muscle Leg	muscle
35	chr4:26694200-26695800	Weak transcription	Fetal Stomach	stomach
36	chr4:26694200-26697400	Weak transcription	Fetal Lung	lung
37	chr4:26694200-26709600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr4:26694400-26695800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr4:26694400-26696200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:26694400-26718600	Weak transcription	Osteobl	bone
41	chr4:26694600-26711600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr4:26695000-26695200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr4:26695000-26696200	ZNF genes & repeats	Fetal Intestine Small	intestine
44	chr4:26695000-26696200	ZNF genes & repeats	Thymus	Thymus
45	chr4:26695000-26704400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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