Variant report

Variant	rs28414180
Chromosome Location	chr4:26711041-26711042
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26702251..26704384-chr4:26709889..26711550,2	K562	blood:

Variant related genes	Relation type
ENSG00000200999	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10008576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10020584	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10023756	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10031208	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1027153	1.00[EUR][1000 genomes]
rs10428307	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10428308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11937874	1.00[EUR][1000 genomes]
rs11944695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11947882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28695240	1.00[AMR][1000 genomes]
rs28766106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28793097	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28843988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4285073	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4488926	1.00[EUR][1000 genomes]
rs4583745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4594713	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57601989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57977934	1.00[EUR][1000 genomes]
rs58733183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60468513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6448468	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6823764	1.00[EUR][1000 genomes]
rs6833670	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6842481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114618	1.00[EUR][1000 genomes]
rs73114637	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114668	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114683	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7660813	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7667400	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7669392	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674362	1.00[EUR][1000 genomes]
rs7674636	1.00[EUR][1000 genomes]
rs7681685	1.00[EUR][1000 genomes]
rs7686313	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7689000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9654108	1.00[EUR][1000 genomes]
rs9990815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9995160	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1822380	chr4:26690284-26726780	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26666800-26732200	Weak transcription	Aorta	Aorta
2	chr4:26681400-26732400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:26681800-26718600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:26681800-26724400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:26684400-26732400	Weak transcription	Fetal Kidney	kidney
6	chr4:26687000-26727000	Weak transcription	Left Ventricle	heart
7	chr4:26692200-26712200	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:26692400-26726400	Weak transcription	Ovary	ovary
9	chr4:26693000-26716000	Weak transcription	HSMM	muscle
10	chr4:26694400-26718600	Weak transcription	Osteobl	bone
11	chr4:26694600-26711600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:26696200-26718800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:26696200-26726400	Weak transcription	Thymus	Thymus
14	chr4:26696200-26775400	Weak transcription	Brain Germinal Matrix	brain
15	chr4:26696400-26718600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:26696400-26726600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:26703800-26715200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:26703800-26718600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:26703800-26718600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:26703800-26718800	Weak transcription	NH-A	brain
21	chr4:26704600-26718600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:26705400-26753200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr4:26707600-26723400	Weak transcription	Psoas Muscle	Psoas
24	chr4:26707800-26717400	Weak transcription	Gastric	stomach
25	chr4:26709000-26717000	Weak transcription	HSMMtube	muscle
26	chr4:26709000-26750000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr4:26710000-26725600	Weak transcription	Primary T cells from cord blood	blood
28	chr4:26710200-26711600	Enhancers	HUVEC	blood vessel
29	chr4:26710200-26721800	Weak transcription	Primary B cells from cord blood	blood
30	chr4:26710600-26711600	Strong transcription	Fetal Thymus	thymus
31	chr4:26710800-26711200	ZNF genes & repeats	Fetal Intestine Large	intestine
32	chr4:26710800-26711600	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr4:26710800-26711600	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr4:26711000-26711200	Enhancers	Adipose Nuclei	Adipose
35	chr4:26711000-26711400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr4:26711000-26711400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr4:26711000-26711400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
38	chr4:26711000-26711600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr4:26711000-26711600	ZNF genes & repeats	Fetal Lung	lung
40	chr4:26711000-26711600	ZNF genes & repeats	Dnd41	blood

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