Variant report

Variant	rs28843988
Chromosome Location	chr4:26774249-26774250
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10008576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10020584	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10023756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10031208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1027153	1.00[EUR][1000 genomes]
rs10428307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10428308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11937874	1.00[EUR][1000 genomes]
rs11944695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11947882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28414180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28695240	1.00[AMR][1000 genomes]
rs28766106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28793097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4285073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4488926	1.00[EUR][1000 genomes]
rs4583745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4594713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57601989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57977934	1.00[EUR][1000 genomes]
rs58733183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60468513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6448468	1.00[EUR][1000 genomes]
rs6823764	1.00[EUR][1000 genomes]
rs6833670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6842481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114618	1.00[EUR][1000 genomes]
rs73114637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7660813	1.00[EUR][1000 genomes]
rs7667400	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7669392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674362	1.00[EUR][1000 genomes]
rs7674636	1.00[EUR][1000 genomes]
rs7681685	1.00[EUR][1000 genomes]
rs7686313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7689000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9654108	1.00[EUR][1000 genomes]
rs9990815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9995160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26696200-26775400	Weak transcription	Brain Germinal Matrix	brain
2	chr4:26719400-26780800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:26723400-26781000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:26727400-26775400	Weak transcription	Right Ventricle	heart
5	chr4:26744400-26775400	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:26745200-26775400	Weak transcription	Brain Anterior Caudate	brain
7	chr4:26746400-26789600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr4:26747600-26775400	Weak transcription	Small Intestine	intestine
9	chr4:26748000-26780200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:26748200-26789000	Weak transcription	Gastric	stomach
11	chr4:26748800-26775400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr4:26749400-26781000	Weak transcription	NHDF-Ad	bronchial
13	chr4:26749800-26789200	Weak transcription	Fetal Kidney	kidney
14	chr4:26750600-26780000	Weak transcription	HMEC	breast
15	chr4:26750600-26781000	Weak transcription	Lung	lung
16	chr4:26750800-26775400	Weak transcription	Fetal Intestine Large	intestine
17	chr4:26751200-26775800	Weak transcription	Primary B cells from cord blood	blood
18	chr4:26751400-26775400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr4:26752200-26780200	Weak transcription	NHEK	skin
20	chr4:26752800-26780000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:26753400-26774600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:26753400-26775800	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr4:26754400-26775400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr4:26754400-26781800	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr4:26754600-26775400	Weak transcription	Fetal Stomach	stomach
26	chr4:26755600-26775400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr4:26755600-26775400	Weak transcription	Ovary	ovary
28	chr4:26755600-26775400	Weak transcription	Psoas Muscle	Psoas
29	chr4:26755600-26788600	Weak transcription	NHLF	lung
30	chr4:26757600-26789000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr4:26758400-26775400	Weak transcription	Brain Hippocampus Middle	brain
32	chr4:26759000-26775400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr4:26761400-26775400	Weak transcription	Thymus	Thymus
34	chr4:26761400-26788800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr4:26763200-26775400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr4:26765000-26775400	Weak transcription	Fetal Intestine Small	intestine
37	chr4:26766200-26775400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr4:26766800-26774600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr4:26767800-26778200	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr4:26768000-26789200	Weak transcription	HSMMtube	muscle
41	chr4:26770800-26776400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr4:26771000-26774600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr4:26771200-26778600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr4:26771400-26775200	Weak transcription	Brain Substantia Nigra	brain
45	chr4:26771400-26778600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr4:26771400-26789400	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr4:26771600-26775000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr4:26771800-26775400	Weak transcription	Liver	Liver
49	chr4:26772200-26775600	Weak transcription	NH-A	brain
50	chr4:26772800-26775200	Strong transcription	Adipose Nuclei	Adipose

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