Variant report

Variant	rs57977934
Chromosome Location	chr4:26784792-26784793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:26784062..26786902-chr4:26787114..26790328,4	MCF-7	breast:
2	chr4:26783232..26784895-chr4:26786899..26788603,2	K562	blood:
3	chr4:26782441..26785167-chr4:26790484..26792733,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TBC1D19-2	chr4:26780029-26786640	NONHSAT095883

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10008576	1.00[EUR][1000 genomes]
rs10020584	1.00[EUR][1000 genomes]
rs10023756	1.00[EUR][1000 genomes]
rs10025586	1.00[EUR][1000 genomes]
rs10031208	1.00[EUR][1000 genomes]
rs10032403	0.95[AFR][1000 genomes]
rs1027153	1.00[EUR][1000 genomes]
rs10428307	1.00[EUR][1000 genomes]
rs10428308	1.00[EUR][1000 genomes]
rs11937874	1.00[EUR][1000 genomes]
rs11944695	1.00[EUR][1000 genomes]
rs11947882	1.00[EUR][1000 genomes]
rs28414180	1.00[EUR][1000 genomes]
rs28581247	0.96[AFR][1000 genomes]
rs28766106	1.00[EUR][1000 genomes]
rs28781653	0.93[AFR][1000 genomes]
rs28793097	1.00[EUR][1000 genomes]
rs28843988	1.00[EUR][1000 genomes]
rs4285073	1.00[EUR][1000 genomes]
rs4488926	1.00[EUR][1000 genomes]
rs4583745	1.00[EUR][1000 genomes]
rs4594713	1.00[EUR][1000 genomes]
rs55765921	0.88[AFR][1000 genomes]
rs57601989	1.00[EUR][1000 genomes]
rs58733183	1.00[EUR][1000 genomes]
rs60468513	1.00[EUR][1000 genomes]
rs6448468	1.00[EUR][1000 genomes]
rs6823764	1.00[EUR][1000 genomes]
rs6833670	1.00[EUR][1000 genomes]
rs6842481	1.00[EUR][1000 genomes]
rs6854269	0.94[AFR][1000 genomes]
rs73114618	1.00[EUR][1000 genomes]
rs73114637	1.00[EUR][1000 genomes]
rs73114668	1.00[EUR][1000 genomes]
rs73114683	1.00[EUR][1000 genomes]
rs7660813	1.00[EUR][1000 genomes]
rs7667400	1.00[EUR][1000 genomes]
rs7669392	1.00[EUR][1000 genomes]
rs7674106	1.00[EUR][1000 genomes]
rs7674362	1.00[EUR][1000 genomes]
rs7674636	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7681685	1.00[EUR][1000 genomes]
rs7686313	1.00[EUR][1000 genomes]
rs7689000	1.00[EUR][1000 genomes]
rs9654108	1.00[EUR][1000 genomes]
rs9990815	1.00[EUR][1000 genomes]
rs9995160	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1005550	chr4:26778410-26824285	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26746400-26789600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr4:26748200-26789000	Weak transcription	Gastric	stomach
3	chr4:26749800-26789200	Weak transcription	Fetal Kidney	kidney
4	chr4:26755600-26788600	Weak transcription	NHLF	lung
5	chr4:26757600-26789000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr4:26761400-26788800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:26768000-26789200	Weak transcription	HSMMtube	muscle
8	chr4:26771400-26789400	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr4:26774200-26789000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:26774400-26787600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr4:26774400-26789200	Weak transcription	Pancreas	Pancrea
12	chr4:26776000-26789000	Weak transcription	Fetal Thymus	thymus
13	chr4:26776000-26789000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr4:26776000-26789400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr4:26776000-26789600	Weak transcription	Colon Smooth Muscle	Colon
16	chr4:26776000-26790000	Weak transcription	Brain Germinal Matrix	brain
17	chr4:26776200-26785200	Weak transcription	Dnd41	blood
18	chr4:26776200-26789200	Weak transcription	Fetal Lung	lung
19	chr4:26776200-26789400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:26776200-26789400	Weak transcription	Fetal Intestine Large	intestine
21	chr4:26776200-26789400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr4:26777000-26789200	Weak transcription	Psoas Muscle	Psoas
23	chr4:26779600-26789400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:26780000-26784800	Enhancers	HMEC	breast
25	chr4:26780200-26785200	Enhancers	Fetal Heart	heart
26	chr4:26780800-26785000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:26781000-26785000	Enhancers	NHDF-Ad	bronchial
28	chr4:26781400-26789600	Weak transcription	Fetal Brain Female	brain
29	chr4:26781600-26789200	Weak transcription	Lung	lung
30	chr4:26782000-26784800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr4:26782200-26785000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:26782200-26785000	Enhancers	Primary hematopoietic stem cells	blood
33	chr4:26782200-26785200	Genic enhancers	Muscle Satellite Cultured Cells	--
34	chr4:26782200-26785400	Weak transcription	Thymus	Thymus
35	chr4:26782400-26788400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr4:26782400-26789200	Weak transcription	NH-A	brain
37	chr4:26782600-26787200	Weak transcription	Primary B cells from cord blood	blood
38	chr4:26782600-26789000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr4:26782600-26789000	Weak transcription	Fetal Intestine Small	intestine
40	chr4:26782600-26789000	Weak transcription	Fetal Stomach	stomach
41	chr4:26782800-26787200	Weak transcription	Primary B cells from peripheral blood	blood
42	chr4:26782800-26787600	Weak transcription	Fetal Muscle Leg	muscle
43	chr4:26782800-26789000	Weak transcription	Spleen	Spleen
44	chr4:26783600-26784800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr4:26783600-26784800	Flanking Active TSS	K562	blood
46	chr4:26783600-26785000	Enhancers	HUVEC	blood vessel
47	chr4:26783600-26786400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr4:26784000-26784800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr4:26784000-26789400	Weak transcription	Primary T cells from cord blood	blood
50	chr4:26784200-26786200	Strong transcription	HSMM	muscle

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