Variant report

Variant	rs28581247
Chromosome Location	chr4:26804622-26804623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26804563..26806113-chr4:26859176..26860809,2	K562	blood:
2	chr4:26804109..26806394-chr4:26811393..26814034,2	K562	blood:

Variant related genes	Relation type
ENSG00000109689	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10032403	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10032858	1.00[EUR][1000 genomes]
rs28645319	1.00[EUR][1000 genomes]
rs28781653	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55765921	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57977934	0.96[AFR][1000 genomes]
rs6854269	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116608	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674636	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1005550	chr4:26778410-26824285	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26790000-26813400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:26791200-26813400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:26793400-26804800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr4:26795000-26813400	Weak transcription	Spleen	Spleen
5	chr4:26797200-26816800	Weak transcription	Stomach Mucosa	stomach
6	chr4:26804000-26809400	Enhancers	Fetal Muscle Leg	muscle
7	chr4:26804200-26804800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr4:26804400-26805600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr4:26804400-26805800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr4:26804400-26805800	Enhancers	Fetal Intestine Small	intestine
11	chr4:26804600-26804800	Enhancers	HSMMtube	muscle
12	chr4:26804600-26805000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:26804600-26805000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr4:26804600-26805400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr4:26804600-26805400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:26804600-26805400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:26804600-26805400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr4:26804600-26805400	Enhancers	Fetal Intestine Large	intestine
19	chr4:26804600-26805600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:26804600-26805600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr4:26804600-26805600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:26804600-26805800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:26804600-26806000	Enhancers	Fetal Stomach	stomach
24	chr4:26804600-26813800	Weak transcription	Psoas Muscle	Psoas

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