Variant report

Variant	rs73116608
Chromosome Location	chr4:26810017-26810018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10032403	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10032858	1.00[EUR][1000 genomes]
rs28581247	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28645319	1.00[EUR][1000 genomes]
rs28781653	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55765921	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6854269	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1005550	chr4:26778410-26824285	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26790000-26813400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:26791200-26813400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:26795000-26813400	Weak transcription	Spleen	Spleen
4	chr4:26797200-26816800	Weak transcription	Stomach Mucosa	stomach
5	chr4:26804600-26813800	Weak transcription	Psoas Muscle	Psoas
6	chr4:26805400-26811600	Weak transcription	Left Ventricle	heart
7	chr4:26805600-26813600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:26805600-26815200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:26806400-26820000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr4:26808000-26823200	Weak transcription	Fetal Intestine Small	intestine
11	chr4:26808200-26810400	Enhancers	Primary B cells from cord blood	blood
12	chr4:26808200-26813600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:26809000-26813800	Weak transcription	Lung	lung
14	chr4:26809400-26811400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr4:26809400-26813000	Weak transcription	Osteobl	bone
16	chr4:26809400-26813400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:26809400-26813400	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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