Variant report

Variant	rs55765921
Chromosome Location	chr4:26814027-26814028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26804109..26806394-chr4:26811393..26814034,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10032403	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10032858	1.00[EUR][1000 genomes]
rs28581247	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28645319	1.00[EUR][1000 genomes]
rs28781653	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57977934	0.88[AFR][1000 genomes]
rs6854269	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116608	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674636	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1005550	chr4:26778410-26824285	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26797200-26816800	Weak transcription	Stomach Mucosa	stomach
2	chr4:26805600-26815200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:26806400-26820000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:26808000-26823200	Weak transcription	Fetal Intestine Small	intestine
5	chr4:26811200-26817200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:26811600-26814200	Enhancers	Left Ventricle	heart
7	chr4:26812400-26815200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr4:26812400-26815400	Weak transcription	Right Ventricle	heart
9	chr4:26813000-26814200	Enhancers	Osteobl	bone
10	chr4:26813000-26814400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
11	chr4:26813000-26815000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr4:26813000-26815400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr4:26813000-26815600	Enhancers	Primary T cells fromperipheralblood	blood
14	chr4:26813000-26819000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:26813200-26815200	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr4:26813400-26814200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:26813400-26814200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr4:26813400-26814200	Enhancers	Fetal Muscle Leg	muscle
19	chr4:26813400-26814400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:26813400-26814800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:26813600-26814200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
22	chr4:26813600-26814200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr4:26813600-26814200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:26813600-26814200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr4:26813600-26814200	Enhancers	Adipose Nuclei	Adipose
26	chr4:26813600-26814200	Enhancers	Fetal Thymus	thymus
27	chr4:26813600-26814200	Enhancers	HSMM	muscle
28	chr4:26813600-26814200	Enhancers	NHEK	skin
29	chr4:26813600-26814400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:26813600-26814400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr4:26813600-26814400	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr4:26813600-26814400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr4:26813600-26814800	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr4:26813600-26814800	Enhancers	HMEC	breast
35	chr4:26813600-26818000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr4:26813800-26814200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr4:26813800-26814200	Flanking Active TSS	Primary T cells from cord blood	blood
38	chr4:26813800-26814200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
39	chr4:26813800-26814200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
40	chr4:26813800-26814200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
41	chr4:26813800-26814200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
42	chr4:26813800-26814200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr4:26813800-26814200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr4:26813800-26814200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
45	chr4:26813800-26814200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr4:26813800-26814200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr4:26813800-26814200	Enhancers	Psoas Muscle	Psoas
48	chr4:26813800-26814200	Flanking Active TSS	HUVEC	blood vessel
49	chr4:26813800-26814400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
50	chr4:26813800-26815800	Enhancers	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links