Variant report

Variant	rs73114637
Chromosome Location	chr4:26666198-26666199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10008576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10020584	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10023756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10031208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1027153	1.00[EUR][1000 genomes]
rs10428307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10428308	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11937874	1.00[EUR][1000 genomes]
rs11944695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11947882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28414180	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28695240	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28766106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28793097	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28843988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4285073	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4488926	1.00[EUR][1000 genomes]
rs4583745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4594713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57601989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57977934	1.00[EUR][1000 genomes]
rs58733183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60468513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6448468	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6823764	1.00[EUR][1000 genomes]
rs6833670	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6842481	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73110909	1.00[EUR][1000 genomes]
rs73114618	1.00[EUR][1000 genomes]
rs73114668	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114683	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7660813	1.00[EUR][1000 genomes]
rs7667400	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7669392	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674106	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674362	1.00[EUR][1000 genomes]
rs7674636	1.00[EUR][1000 genomes]
rs7681685	1.00[EUR][1000 genomes]
rs7686313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7689000	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9654108	1.00[EUR][1000 genomes]
rs9990815	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9995160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26623000-26670400	Weak transcription	Gastric	stomach
2	chr4:26629200-26680800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:26635000-26675200	Weak transcription	NHDF-Ad	bronchial
4	chr4:26640000-26691400	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:26642400-26666600	Weak transcription	Left Ventricle	heart
6	chr4:26642400-26697400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr4:26642800-26680000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:26642800-26680800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr4:26656800-26679200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr4:26657600-26666400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:26657600-26676800	Weak transcription	Pancreas	Pancrea
12	chr4:26657600-26678400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:26657600-26679200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:26657600-26680600	Weak transcription	Brain Hippocampus Middle	brain
15	chr4:26657800-26678600	Weak transcription	Fetal Lung	lung
16	chr4:26658400-26679800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:26658400-26679800	Weak transcription	Fetal Intestine Small	intestine
18	chr4:26658600-26669800	Weak transcription	Brain Germinal Matrix	brain
19	chr4:26659000-26674200	Weak transcription	NHLF	lung
20	chr4:26659000-26677600	Weak transcription	Dnd41	blood
21	chr4:26659600-26687600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr4:26660000-26680800	Weak transcription	Esophagus	oesophagus
23	chr4:26660200-26672400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:26660200-26679800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr4:26660200-26680200	Weak transcription	Fetal Brain Male	brain
26	chr4:26660400-26666400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr4:26660600-26689000	Weak transcription	HMEC	breast
28	chr4:26660800-26679200	Weak transcription	NHEK	skin
29	chr4:26660800-26691400	Weak transcription	Psoas Muscle	Psoas
30	chr4:26661000-26680400	Weak transcription	Liver	Liver
31	chr4:26661200-26666800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr4:26661600-26670800	Strong transcription	Fetal Thymus	thymus
33	chr4:26661600-26672400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:26662200-26669600	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr4:26662600-26666800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr4:26662800-26680000	Weak transcription	Fetal Brain Female	brain
37	chr4:26663200-26670000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr4:26663200-26678000	Weak transcription	Fetal Stomach	stomach
39	chr4:26663200-26680600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr4:26663200-26680600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr4:26663400-26680200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr4:26663400-26680800	Weak transcription	Lung	lung
43	chr4:26663600-26666400	Weak transcription	Aorta	Aorta
44	chr4:26663600-26666400	Weak transcription	Thymus	Thymus
45	chr4:26663600-26671000	Weak transcription	Primary hematopoietic stem cells	blood
46	chr4:26663600-26678000	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr4:26663600-26678200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr4:26663600-26679800	Weak transcription	Primary T cells from cord blood	blood
49	chr4:26663600-26680000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr4:26663600-26680400	Weak transcription	Brain Inferior Temporal Lobe	brain

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