Variant report

Variant	rs10428307
Chromosome Location	chr4:26758941-26758942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10008576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10020584	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10023756	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10031208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1027153	1.00[EUR][1000 genomes]
rs10428308	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11937874	1.00[EUR][1000 genomes]
rs11944695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11947882	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28414180	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28695240	1.00[AMR][1000 genomes]
rs28766106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28793097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28843988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4285073	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4488926	1.00[EUR][1000 genomes]
rs4583745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4594713	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57601989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57977934	1.00[EUR][1000 genomes]
rs58733183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60468513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6448468	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6823764	1.00[EUR][1000 genomes]
rs6833670	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6842481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114618	1.00[EUR][1000 genomes]
rs73114637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114668	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114683	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7660813	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7667400	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7669392	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674362	1.00[EUR][1000 genomes]
rs7674636	1.00[EUR][1000 genomes]
rs7681685	1.00[EUR][1000 genomes]
rs7686313	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7689000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9654108	1.00[EUR][1000 genomes]
rs9990815	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9995160	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26696200-26775400	Weak transcription	Brain Germinal Matrix	brain
2	chr4:26711400-26771800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr4:26719400-26780800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:26723400-26781000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:26723600-26764200	Weak transcription	Fetal Intestine Small	intestine
6	chr4:26724000-26772000	Weak transcription	Brain Angular Gyrus	brain
7	chr4:26727400-26773800	Weak transcription	Left Ventricle	heart
8	chr4:26727400-26775400	Weak transcription	Right Ventricle	heart
9	chr4:26732600-26773800	Weak transcription	Aorta	Aorta
10	chr4:26744400-26775400	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:26745200-26775400	Weak transcription	Brain Anterior Caudate	brain
12	chr4:26746400-26789600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr4:26746600-26761600	Weak transcription	Dnd41	blood
14	chr4:26746800-26767000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr4:26747600-26773800	Weak transcription	Pancreas	Pancrea
16	chr4:26747600-26775400	Weak transcription	Small Intestine	intestine
17	chr4:26748000-26780200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:26748200-26773600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr4:26748200-26789000	Weak transcription	Gastric	stomach
20	chr4:26748600-26773800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:26748800-26766600	Weak transcription	K562	blood
22	chr4:26748800-26772200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr4:26748800-26775400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr4:26749200-26765400	Weak transcription	Spleen	Spleen
25	chr4:26749400-26781000	Weak transcription	NHDF-Ad	bronchial
26	chr4:26749800-26762000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:26749800-26762000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr4:26749800-26789200	Weak transcription	Fetal Kidney	kidney
29	chr4:26750200-26761800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr4:26750600-26772800	Weak transcription	Adipose Nuclei	Adipose
31	chr4:26750600-26774200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr4:26750600-26780000	Weak transcription	HMEC	breast
33	chr4:26750600-26781000	Weak transcription	Lung	lung
34	chr4:26750800-26775400	Weak transcription	Fetal Intestine Large	intestine
35	chr4:26751000-26764400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:26751200-26764400	Weak transcription	Primary B cells from peripheral blood	blood
37	chr4:26751200-26775800	Weak transcription	Primary B cells from cord blood	blood
38	chr4:26751400-26775400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr4:26751800-26762200	Weak transcription	Fetal Brain Female	brain
40	chr4:26751800-26762400	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr4:26752200-26780200	Weak transcription	NHEK	skin
42	chr4:26752800-26780000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr4:26753400-26764200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr4:26753400-26774600	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr4:26753400-26775800	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr4:26753600-26764200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr4:26753600-26764200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr4:26753600-26764400	Weak transcription	Primary hematopoietic stem cells	blood
49	chr4:26754400-26775400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr4:26754400-26781800	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links