Variant report

Variant	rs10805265
Chromosome Location	chr4:26585311-26585312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:26585162-26585827	GM12878	blood:	n/a	n/a
2	FOXA2	chr4:26585302-26585974	A549	lung:	n/a	n/a
3	SIN3AK20	chr4:26585219-26586123	MCF-7	breast:	n/a	n/a
4	MYBL2	chr4:26585291-26585884	HepG2	liver:	n/a	n/a
5	MAX	chr4:26585238-26586082	SK-N-SH	brain:	n/a	n/a
6	ATF2	chr4:26585109-26585860	GM12878	blood:	n/a	n/a
7	GABPA	chr4:26585076-26585922	A549	lung:	n/a	n/a
8	POLR2A	chr4:26585050-26585950	GM12891	blood:	n/a	n/a
9	CREB1	chr4:26585214-26585868	H1-hESC	embryonic stem cell:	n/a	n/a
10	REST	chr4:26585156-26585975	H1-neurons	neurons:	n/a	n/a
11	ATF3	chr4:26585222-26585822	A549	lung:	n/a	chr4:26585583-26585592
12	TEAD4	chr4:26585178-26585827	K562	blood:	n/a	n/a
13	GABPA	chr4:26585202-26585942	HL-60	blood:	n/a	n/a
14	YY1	chr4:26585142-26585861	SK-N-SH_RA	brain:	n/a	n/a
15	POLR2A	chr4:26585261-26585957	GM18951	blood:	n/a	n/a
16	SIN3AK20	chr4:26585097-26586266	HCT-116	colon:	n/a	n/a
17	POLR2A	chr4:26585086-26586282	MCF10A-Er-Src	breast:	n/a	n/a
18	POLR2A	chr4:26585212-26585990	GM12878	blood:	n/a	n/a
19	FOS	chr4:26585233-26585751	MCF10A-Er-Src	breast:	n/a	n/a
20	PML	chr4:26585192-26586073	GM12878	blood:	n/a	n/a
21	FOS	chr4:26585200-26585774	MCF10A-Er-Src	breast:	n/a	n/a
22	GABPA	chr4:26585120-26586000	SK-N-SH	brain:	n/a	n/a
23	KAP1	chr4:26585268-26585852	K562	blood:	n/a	n/a
24	GABPA	chr4:26584948-26586049	HL-60	blood:	n/a	n/a
25	POLR2A	chr4:26585103-26586317	U87	brain:	n/a	n/a
26	RFX5	chr4:26585241-26585797	H1-hESC	embryonic stem cell:	n/a	chr4:26585675-26585688 chr4:26585674-26585688 chr4:26585673-26585689
27	MAX	chr4:26585159-26585859	A549	lung:	n/a	n/a
28	MAFK	chr4:26585298-26585767	HepG2	liver:	n/a	n/a
29	GABPA	chr4:26585069-26586129	SK-N-SH	brain:	n/a	n/a
30	RFX5	chr4:26585203-26585847	Hela-S3	cervix:	n/a	chr4:26585675-26585688 chr4:26585674-26585688 chr4:26585673-26585689
31	SIN3A	chr4:26585231-26585978	GM12878	blood:	n/a	n/a
32	FOXM1	chr4:26585174-26586067	GM12878	blood:	n/a	n/a
33	CUX1	chr4:26585270-26586022	K562	blood:	n/a	n/a
34	POLR2A	chr4:26585186-26585959	GM19193	blood:	n/a	n/a
35	POLR2A	chr4:26585144-26585917	H1-hESC	embryonic stem cell:	n/a	n/a
36	FOXA1	chr4:26585218-26585411	T-47D	breast:	n/a	n/a
37	CBX3	chr4:26584974-26586052	HCT-116	colon:	n/a	n/a
38	FOSL2	chr4:26585258-26585757	A549	lung:	n/a	n/a
39	HCFC1	chr4:26584990-26586058	Hela-S3	cervix:	n/a	n/a
40	POLR2A	chr4:26585200-26585939	GM12891	blood:	n/a	n/a
41	MXI1	chr4:26584947-26586033	GM12878	blood:	n/a	n/a
42	POLR2A	chr4:26585053-26585961	H1-hESC	embryonic stem cell:	n/a	n/a
43	TAF1	chr4:26585179-26586071	ECC-1	luminal epithelium:	n/a	n/a
44	STAT3	chr4:26585292-26585762	MCF10A-Er-Src	breast:	n/a	chr4:26585553-26585561
45	POLR2A	chr4:26585101-26586014	GM12892	blood:	n/a	n/a
46	SIN3A	chr4:26585221-26585953	H1-hESC	embryonic stem cell:	n/a	n/a
47	MAX	chr4:26585300-26586237	Hela-S3	cervix:	n/a	n/a
48	MAZ	chr4:26585271-26586041	GM12878	blood:	n/a	n/a
49	ZNF143	chr4:26585233-26585815	Hela-S3	cervix:	n/a	n/a
50	ELK1	chr4:26585258-26585845	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
TBC1D19	TF binding region

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10014273	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10031954	0.81[ASN][1000 genomes]
rs10470786	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10939130	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11737510	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11937874	1.00[MEX][hapmap]
rs13117759	0.81[ASN][1000 genomes]
rs13133205	0.80[ASN][1000 genomes]
rs13353547	0.81[ASN][1000 genomes]
rs1387541	1.00[ASN][1000 genomes]
rs1641558	0.87[ASN][1000 genomes]
rs1641560	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1641561	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs166353	1.00[MEX][hapmap]
rs1686374	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1686383	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16878551	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1994551	0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs2309411	0.87[ASN][1000 genomes]
rs2309414	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs260941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs260942	1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs260944	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs260947	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs260951	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs260954	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs260955	1.00[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs28420370	1.00[ASN][1000 genomes]
rs28474372	1.00[ASN][1000 genomes]
rs4235020	0.81[ASN][1000 genomes]
rs4285073	1.00[MEX][hapmap]
rs4416469	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4583745	1.00[MEX][hapmap]
rs4594713	1.00[MEX][hapmap]
rs6831895	0.81[ASN][1000 genomes]
rs6833757	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6857426	1.00[ASN][1000 genomes]
rs73114606	0.87[ASN][1000 genomes]
rs73114608	0.98[ASN][1000 genomes]
rs7656543	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7667400	1.00[MEX][hapmap]
rs7669392	1.00[MEX][hapmap]
rs7670323	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7672066	0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7674362	1.00[MEX][hapmap]
rs7690923	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9997756	0.81[ASN][1000 genomes]
rs9997999	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26584600-26585400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:26584800-26585400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:26584800-26585400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
4	chr4:26584800-26585400	Flanking Active TSS	HMEC	breast
5	chr4:26584800-26585400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr4:26584800-26585600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:26584800-26586200	Active TSS	Brain Anterior Caudate	brain
8	chr4:26584800-26586200	Active TSS	Brain Cingulate Gyrus	brain
9	chr4:26584800-26586200	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr4:26584800-26586200	Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr4:26584800-26586200	Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr4:26584800-26586200	Active TSS	Stomach Smooth Muscle	stomach
13	chr4:26584800-26586400	Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr4:26584800-26586400	Active TSS	Brain Hippocampus Middle	brain
15	chr4:26584800-26586400	Active TSS	Fetal Kidney	kidney
16	chr4:26584800-26586600	Active TSS	Primary B cells from cord blood	blood
17	chr4:26584800-26586800	Active TSS	Brain Germinal Matrix	brain
18	chr4:26584800-26586800	Active TSS	Fetal Brain Female	brain
19	chr4:26584800-26587000	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr4:26584800-26587200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:26585000-26585400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr4:26585000-26585400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr4:26585000-26585400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:26585000-26585400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
25	chr4:26585000-26585400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr4:26585000-26585400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:26585000-26585400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr4:26585000-26585400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
29	chr4:26585000-26585400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
30	chr4:26585000-26585400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
31	chr4:26585000-26585400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
32	chr4:26585000-26585400	Flanking Active TSS	GM12878-XiMat	blood
33	chr4:26585000-26585400	Flanking Active TSS	NH-A	brain
34	chr4:26585000-26585400	Flanking Active TSS	NHLF	lung
35	chr4:26585000-26585400	Flanking Active TSS	Osteobl	bone
36	chr4:26585000-26585600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr4:26585000-26585600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr4:26585000-26585600	Flanking Active TSS	Adipose Nuclei	Adipose
39	chr4:26585000-26585600	Flanking Active TSS	Liver	Liver
40	chr4:26585000-26585600	Flanking Active TSS	Dnd41	blood
41	chr4:26585000-26585600	Flanking Active TSS	Hela-S3	cervix
42	chr4:26585000-26585600	Flanking Active TSS	HUVEC	blood vessel
43	chr4:26585000-26585600	Flanking Active TSS	K562	blood
44	chr4:26585000-26586000	Active TSS	Primary T cells fromperipheralblood	blood
45	chr4:26585000-26586000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
46	chr4:26585000-26586000	Active TSS	Duodenum Mucosa	Duodenum
47	chr4:26585000-26586000	Active TSS	Fetal Muscle Leg	muscle
48	chr4:26585000-26586000	Active TSS	Placenta	Placenta
49	chr4:26585000-26586200	Active TSS	iPS-18 Cell Line	embryonic stem cell
50	chr4:26585000-26586200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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