Variant report

Variant	rs1641560
Chromosome Location	chr4:26645468-26645469
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10014273	0.87[ASN][1000 genomes]
rs10031954	0.87[ASN][1000 genomes]
rs10470786	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10805265	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10939130	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11737510	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13117759	0.87[ASN][1000 genomes]
rs13353547	0.87[ASN][1000 genomes]
rs1387541	0.85[ASN][1000 genomes]
rs1641558	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1641561	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs166353	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1686374	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1686383	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16878551	0.91[ASN][1000 genomes]
rs1994551	0.81[ASN][1000 genomes]
rs2309411	0.81[ASN][1000 genomes]
rs2309414	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs260941	0.91[ASN][1000 genomes]
rs260942	0.91[ASN][1000 genomes]
rs260944	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs260947	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs260951	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs260954	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs260955	0.91[ASN][1000 genomes]
rs28420370	0.85[ASN][1000 genomes]
rs28474372	0.85[ASN][1000 genomes]
rs4235020	0.87[ASN][1000 genomes]
rs4416469	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6831895	0.87[ASN][1000 genomes]
rs6833757	0.83[ASN][1000 genomes]
rs6857426	0.85[ASN][1000 genomes]
rs73114606	0.81[ASN][1000 genomes]
rs73114608	0.83[ASN][1000 genomes]
rs7656543	0.85[ASN][1000 genomes]
rs7670323	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7672066	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7690923	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9997756	0.87[ASN][1000 genomes]
rs9997999	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26606400-26656600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:26609600-26649400	Weak transcription	Psoas Muscle	Psoas
3	chr4:26613800-26657200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:26616600-26662600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr4:26618200-26657200	Weak transcription	Pancreas	Pancrea
6	chr4:26619600-26645600	Weak transcription	Spleen	Spleen
7	chr4:26622400-26645600	Weak transcription	NHLF	lung
8	chr4:26622400-26662400	Weak transcription	Right Ventricle	heart
9	chr4:26623000-26670400	Weak transcription	Gastric	stomach
10	chr4:26625600-26665600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr4:26629200-26680800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr4:26629400-26656800	Weak transcription	Lung	lung
13	chr4:26633800-26657000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:26633800-26658600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr4:26634000-26657000	Weak transcription	Brain Hippocampus Middle	brain
16	chr4:26635000-26675200	Weak transcription	NHDF-Ad	bronchial
17	chr4:26637600-26649400	Weak transcription	Placenta	Placenta
18	chr4:26640000-26691400	Weak transcription	Colon Smooth Muscle	Colon
19	chr4:26640400-26651000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:26640800-26662800	Weak transcription	NH-A	brain
21	chr4:26641000-26645600	Weak transcription	Adipose Nuclei	Adipose
22	chr4:26641000-26661400	Weak transcription	HSMMtube	muscle
23	chr4:26641000-26662000	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr4:26641000-26664000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr4:26642000-26649000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr4:26642000-26662000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr4:26642400-26645600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr4:26642400-26649600	Weak transcription	Dnd41	blood
29	chr4:26642400-26657000	Weak transcription	Fetal Lung	lung
30	chr4:26642400-26657200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr4:26642400-26659800	Weak transcription	Fetal Brain Male	brain
32	chr4:26642400-26662600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:26642400-26663000	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr4:26642400-26666600	Weak transcription	Left Ventricle	heart
35	chr4:26642400-26697400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr4:26642600-26646000	Weak transcription	Brain Germinal Matrix	brain
37	chr4:26642600-26648600	Weak transcription	Brain Angular Gyrus	brain
38	chr4:26642600-26656800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr4:26642600-26656800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr4:26642600-26656800	Weak transcription	Fetal Muscle Trunk	muscle
41	chr4:26642600-26657000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr4:26642600-26657000	Weak transcription	Ovary	ovary
43	chr4:26642600-26661200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr4:26642600-26662000	Weak transcription	Osteobl	bone
45	chr4:26642600-26662200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr4:26642600-26662800	Weak transcription	Fetal Kidney	kidney
47	chr4:26642800-26656600	Weak transcription	Fetal Intestine Large	intestine
48	chr4:26642800-26657000	Weak transcription	Aorta	Aorta
49	chr4:26642800-26657200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr4:26642800-26658200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links