Variant report

Variant	rs260942
Chromosome Location	chr4:26663867-26663868
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26662958..26665135-chr4:26667444..26669654,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10014273	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs10031954	0.87[ASN][1000 genomes]
rs10470786	1.00[CHB][hapmap];0.81[JPT][hapmap];0.95[ASN][1000 genomes]
rs10805265	1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs10939130	1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs11737510	0.87[ASN][1000 genomes]
rs13117759	0.87[ASN][1000 genomes]
rs13353547	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1387541	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1641558	0.93[ASN][1000 genomes]
rs1641560	0.91[ASN][1000 genomes]
rs1641561	1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs1686374	0.95[ASN][1000 genomes]
rs1686383	1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs16878551	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1994551	0.80[ASN][1000 genomes]
rs2309411	0.80[ASN][1000 genomes]
rs2309414	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs260941	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs260944	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[ASN][1000 genomes]
rs260947	1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs260951	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs260954	0.91[ASN][1000 genomes]
rs260955	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28420370	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28474372	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4235020	0.87[ASN][1000 genomes]
rs4416469	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs6831895	0.87[ASN][1000 genomes]
rs6833757	1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6857426	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73114606	0.80[ASN][1000 genomes]
rs73114608	0.83[ASN][1000 genomes]
rs7656543	1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7670323	0.87[ASN][1000 genomes]
rs7672066	1.00[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs7690923	0.87[ASN][1000 genomes]
rs9997756	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9997999	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26623000-26670400	Weak transcription	Gastric	stomach
2	chr4:26625600-26665600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr4:26629200-26680800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr4:26635000-26675200	Weak transcription	NHDF-Ad	bronchial
5	chr4:26640000-26691400	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:26641000-26664000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:26642400-26666600	Weak transcription	Left Ventricle	heart
8	chr4:26642400-26697400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr4:26642800-26680000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:26642800-26680800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:26656800-26679200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:26657400-26665000	Weak transcription	Brain Substantia Nigra	brain
13	chr4:26657600-26664600	Weak transcription	Brain Angular Gyrus	brain
14	chr4:26657600-26664800	Weak transcription	Spleen	Spleen
15	chr4:26657600-26665000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:26657600-26666400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:26657600-26676800	Weak transcription	Pancreas	Pancrea
18	chr4:26657600-26678400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:26657600-26679200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:26657600-26680600	Weak transcription	Brain Hippocampus Middle	brain
21	chr4:26657800-26678600	Weak transcription	Fetal Lung	lung
22	chr4:26658400-26679800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr4:26658400-26679800	Weak transcription	Fetal Intestine Small	intestine
24	chr4:26658600-26669800	Weak transcription	Brain Germinal Matrix	brain
25	chr4:26659000-26674200	Weak transcription	NHLF	lung
26	chr4:26659000-26677600	Weak transcription	Dnd41	blood
27	chr4:26659600-26687600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr4:26660000-26680800	Weak transcription	Esophagus	oesophagus
29	chr4:26660200-26672400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:26660200-26679800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr4:26660200-26680200	Weak transcription	Fetal Brain Male	brain
32	chr4:26660400-26666400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr4:26660600-26689000	Weak transcription	HMEC	breast
34	chr4:26660800-26679200	Weak transcription	NHEK	skin
35	chr4:26660800-26691400	Weak transcription	Psoas Muscle	Psoas
36	chr4:26661000-26680400	Weak transcription	Liver	Liver
37	chr4:26661200-26666000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr4:26661200-26666800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr4:26661400-26664000	Strong transcription	HSMMtube	muscle
40	chr4:26661600-26670800	Strong transcription	Fetal Thymus	thymus
41	chr4:26661600-26672400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr4:26661800-26665800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr4:26662000-26664000	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr4:26662000-26665000	Strong transcription	Osteobl	bone
45	chr4:26662000-26665200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr4:26662000-26665400	Strong transcription	Fetal Muscle Leg	muscle
47	chr4:26662000-26665600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr4:26662200-26664800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr4:26662200-26669600	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr4:26662400-26664000	Strong transcription	Primary T cells fromperipheralblood	blood

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