Variant report

Variant	rs10031954
Chromosome Location	chr4:26776457-26776458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10014273	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10470786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10805265	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10939130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11737510	1.00[ASN][1000 genomes]
rs13117759	1.00[ASN][1000 genomes]
rs13353547	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1387541	0.81[ASN][1000 genomes]
rs1641558	0.89[ASN][1000 genomes]
rs1641560	0.87[ASN][1000 genomes]
rs1641561	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1686374	0.91[ASN][1000 genomes]
rs1686383	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16878551	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1994551	0.80[ASN][1000 genomes]
rs2309411	0.80[ASN][1000 genomes]
rs2309414	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs260941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs260942	1.00[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs260944	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs260947	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs260951	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs260954	0.87[ASN][1000 genomes]
rs260955	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs28420370	0.81[ASN][1000 genomes]
rs28474372	0.81[ASN][1000 genomes]
rs28788902	0.91[AMR][1000 genomes]
rs28824849	0.82[AMR][1000 genomes]
rs28896552	0.91[AMR][1000 genomes]
rs4235020	1.00[ASN][1000 genomes]
rs4416469	1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs6831895	1.00[ASN][1000 genomes]
rs6833757	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6857426	0.81[ASN][1000 genomes]
rs73114606	0.80[ASN][1000 genomes]
rs73114608	0.83[ASN][1000 genomes]
rs7656543	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7670323	1.00[ASN][1000 genomes]
rs7672066	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7690923	1.00[ASN][1000 genomes]
rs9997756	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9997999	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26719400-26780800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:26723400-26781000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:26746400-26789600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr4:26748000-26780200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:26748200-26789000	Weak transcription	Gastric	stomach
6	chr4:26749400-26781000	Weak transcription	NHDF-Ad	bronchial
7	chr4:26749800-26789200	Weak transcription	Fetal Kidney	kidney
8	chr4:26750600-26780000	Weak transcription	HMEC	breast
9	chr4:26750600-26781000	Weak transcription	Lung	lung
10	chr4:26752200-26780200	Weak transcription	NHEK	skin
11	chr4:26752800-26780000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:26754400-26781800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr4:26755600-26788600	Weak transcription	NHLF	lung
14	chr4:26757600-26789000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:26761400-26788800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr4:26767800-26778200	Strong transcription	Muscle Satellite Cultured Cells	--
17	chr4:26768000-26789200	Weak transcription	HSMMtube	muscle
18	chr4:26771200-26778600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:26771400-26778600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr4:26771400-26789400	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr4:26774200-26789000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:26774400-26783800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:26774400-26787600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr4:26774400-26789200	Weak transcription	Pancreas	Pancrea
25	chr4:26774600-26776800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr4:26774600-26777000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
27	chr4:26774800-26781000	Weak transcription	Primary T cells from cord blood	blood
28	chr4:26775400-26776600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
29	chr4:26775400-26776600	ZNF genes & repeats	Fetal Muscle Leg	muscle
30	chr4:26775400-26777000	ZNF genes & repeats	Psoas Muscle	Psoas
31	chr4:26775400-26777200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
32	chr4:26775600-26776800	Strong transcription	Osteobl	bone
33	chr4:26775800-26778800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr4:26775800-26780800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr4:26775800-26780800	Weak transcription	Fetal Stomach	stomach
36	chr4:26775800-26781000	Weak transcription	Left Ventricle	heart
37	chr4:26775800-26782000	Weak transcription	Thymus	Thymus
38	chr4:26776000-26776800	Weak transcription	Aorta	Aorta
39	chr4:26776000-26776800	Weak transcription	HSMM	muscle
40	chr4:26776000-26778800	Weak transcription	Fetal Intestine Small	intestine
41	chr4:26776000-26780600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr4:26776000-26780800	Weak transcription	Right Ventricle	heart
43	chr4:26776000-26783600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr4:26776000-26783800	Weak transcription	Ovary	ovary
45	chr4:26776000-26789000	Weak transcription	Fetal Thymus	thymus
46	chr4:26776000-26789000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr4:26776000-26789400	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr4:26776000-26789600	Weak transcription	Colon Smooth Muscle	Colon
49	chr4:26776000-26790000	Weak transcription	Brain Germinal Matrix	brain
50	chr4:26776200-26776600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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