Variant report

Variant	rs260947
Chromosome Location	chr4:26607991-26607992
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10014273	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10031954	0.85[ASN][1000 genomes]
rs10470786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10805265	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10939130	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11737510	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13117759	0.85[ASN][1000 genomes]
rs13133205	0.80[ASN][1000 genomes]
rs13353547	0.85[ASN][1000 genomes]
rs1387541	0.91[ASN][1000 genomes]
rs1641558	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1641560	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1641561	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs166353	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1686374	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1686383	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16878551	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1994551	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2309411	0.82[ASN][1000 genomes]
rs2309414	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs260941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs260942	1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs260944	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs260951	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs260954	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs260955	1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs28420370	0.91[ASN][1000 genomes]
rs28474372	0.91[ASN][1000 genomes]
rs4235020	0.85[ASN][1000 genomes]
rs4416469	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6831895	0.85[ASN][1000 genomes]
rs6833757	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6857426	0.91[ASN][1000 genomes]
rs73114606	0.82[ASN][1000 genomes]
rs73114608	0.89[ASN][1000 genomes]
rs7656543	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7670323	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7672066	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7681685	0.89[AMR][1000 genomes]
rs7690923	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9997756	0.85[ASN][1000 genomes]
rs9997999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966489	chr4:26600972-26641744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26591600-26609400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:26596200-26621000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:26598800-26613400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:26606400-26615400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:26606400-26656600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:26607600-26610200	Enhancers	Fetal Thymus	thymus
7	chr4:26607600-26615800	Enhancers	Dnd41	blood
8	chr4:26607800-26609800	Enhancers	Thymus	Thymus

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