Variant report

Variant	rs6833757
Chromosome Location	chr4:26684111-26684112
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26684070..26686725-chr4:26688088..26690746,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10014273	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10031954	0.95[ASN][1000 genomes]
rs10470786	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10805265	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10939130	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11737510	0.95[ASN][1000 genomes]
rs13117759	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs13353547	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1387541	1.00[EUR][1000 genomes]
rs1641558	0.85[ASN][1000 genomes]
rs1641560	0.83[ASN][1000 genomes]
rs1641561	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1686374	0.87[ASN][1000 genomes]
rs1686383	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16878551	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1994551	0.83[CHD][hapmap];0.89[JPT][hapmap]
rs2309414	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs260941	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs260942	1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs260944	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs260947	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs260951	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs260954	0.83[ASN][1000 genomes]
rs260955	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.91[LWK][hapmap];0.86[MKK][hapmap];0.87[YRI][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28420370	1.00[EUR][1000 genomes]
rs28474372	1.00[EUR][1000 genomes]
rs4235020	0.95[ASN][1000 genomes]
rs4416469	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs6831895	0.95[ASN][1000 genomes]
rs6857426	1.00[EUR][1000 genomes]
rs7656543	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7670323	0.95[ASN][1000 genomes]
rs7672066	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7690923	0.95[ASN][1000 genomes]
rs9997756	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9997999	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26640000-26691400	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:26642400-26697400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:26659600-26687600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:26660600-26689000	Weak transcription	HMEC	breast
5	chr4:26660800-26691400	Weak transcription	Psoas Muscle	Psoas
6	chr4:26663600-26691800	Weak transcription	Right Ventricle	heart
7	chr4:26663800-26691200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr4:26663800-26691400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:26663800-26694000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:26666800-26685800	Weak transcription	Left Ventricle	heart
11	chr4:26666800-26691200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:26666800-26732200	Weak transcription	Aorta	Aorta
13	chr4:26676000-26687000	Weak transcription	NHDF-Ad	bronchial
14	chr4:26676800-26685800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:26678600-26691400	Weak transcription	Adipose Nuclei	Adipose
16	chr4:26680000-26688400	Weak transcription	NHLF	lung
17	chr4:26680400-26691000	Weak transcription	Primary T cells from cord blood	blood
18	chr4:26681400-26688200	Weak transcription	NH-A	brain
19	chr4:26681400-26691400	Weak transcription	Ovary	ovary
20	chr4:26681400-26691800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr4:26681400-26693000	Weak transcription	Fetal Stomach	stomach
22	chr4:26681400-26694800	Weak transcription	Fetal Intestine Large	intestine
23	chr4:26681400-26695200	Weak transcription	Lung	lung
24	chr4:26681400-26695400	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr4:26681400-26697000	Weak transcription	Esophagus	oesophagus
26	chr4:26681400-26732400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr4:26681600-26685400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr4:26681600-26685800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr4:26681600-26685800	Weak transcription	Gastric	stomach
30	chr4:26681600-26685800	Weak transcription	HSMM	muscle
31	chr4:26681600-26687800	Weak transcription	Fetal Brain Male	brain
32	chr4:26681600-26691200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr4:26681600-26691400	Weak transcription	Brain Hippocampus Middle	brain
34	chr4:26681600-26692200	Weak transcription	Liver	Liver
35	chr4:26681600-26693600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr4:26681600-26695600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr4:26681800-26684800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr4:26681800-26685800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr4:26681800-26685800	Weak transcription	Thymus	Thymus
40	chr4:26681800-26686000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr4:26681800-26686000	Weak transcription	Fetal Muscle Leg	muscle
42	chr4:26681800-26686800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr4:26681800-26686800	Weak transcription	HSMMtube	muscle
44	chr4:26681800-26689200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr4:26681800-26691000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:26681800-26691200	Weak transcription	Brain Angular Gyrus	brain
47	chr4:26681800-26691400	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr4:26681800-26693800	Weak transcription	Fetal Intestine Small	intestine
49	chr4:26681800-26694200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr4:26681800-26694200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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