Variant report

Variant	rs260951
Chromosome Location	chr4:26600615-26600616
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10014273	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10031954	0.83[ASN][1000 genomes]
rs10470786	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10805265	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10939130	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11737510	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13117759	0.83[ASN][1000 genomes]
rs13133205	0.94[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13353547	0.83[ASN][1000 genomes]
rs1387541	0.98[ASN][1000 genomes]
rs1641558	0.89[ASN][1000 genomes]
rs1641560	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1641561	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1686374	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1686383	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16878551	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1994551	0.88[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs2309411	0.84[ASN][1000 genomes]
rs2309414	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs260941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs260942	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs260944	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs260947	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs260954	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs260955	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs28420370	0.98[ASN][1000 genomes]
rs28474372	0.98[ASN][1000 genomes]
rs4235020	0.83[ASN][1000 genomes]
rs4416469	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6831895	0.83[ASN][1000 genomes]
rs6833757	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6857426	0.98[ASN][1000 genomes]
rs73114606	0.84[ASN][1000 genomes]
rs73114608	0.95[ASN][1000 genomes]
rs7656543	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7670323	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7672066	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7690923	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9997756	0.83[ASN][1000 genomes]
rs9997999	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26586600-26601000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:26587000-26602000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:26587000-26603200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:26591600-26609400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:26591800-26607800	Weak transcription	Thymus	Thymus
6	chr4:26596200-26621000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:26596800-26601000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:26598800-26613400	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links