Variant report

Variant	rs260944
Chromosome Location	chr4:26661610-26661611
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10014273	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10031954	0.87[ASN][1000 genomes]
rs10470786	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10805265	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10939130	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11737510	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13117759	0.87[ASN][1000 genomes]
rs13353547	0.87[ASN][1000 genomes]
rs1387541	0.85[ASN][1000 genomes]
rs1641558	0.93[ASN][1000 genomes]
rs1641560	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1641561	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1686374	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1686383	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16878551	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1994551	0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs2309411	0.80[ASN][1000 genomes]
rs2309414	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs260941	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs260942	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[ASN][1000 genomes]
rs260947	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs260951	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs260954	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs260955	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs28420370	0.85[ASN][1000 genomes]
rs28474372	0.85[ASN][1000 genomes]
rs4235020	0.87[ASN][1000 genomes]
rs4416469	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6831895	0.87[ASN][1000 genomes]
rs6833757	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6857426	0.85[ASN][1000 genomes]
rs73114606	0.80[ASN][1000 genomes]
rs73114608	0.83[ASN][1000 genomes]
rs7656543	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7670323	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7672066	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7690923	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9997756	0.87[ASN][1000 genomes]
rs9997999	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26616600-26662600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:26622400-26662400	Weak transcription	Right Ventricle	heart
3	chr4:26623000-26670400	Weak transcription	Gastric	stomach
4	chr4:26625600-26665600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:26629200-26680800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr4:26635000-26675200	Weak transcription	NHDF-Ad	bronchial
7	chr4:26640000-26691400	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:26640800-26662800	Weak transcription	NH-A	brain
9	chr4:26641000-26662000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr4:26641000-26664000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr4:26642000-26662000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:26642400-26662600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:26642400-26663000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr4:26642400-26666600	Weak transcription	Left Ventricle	heart
15	chr4:26642400-26697400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr4:26642600-26662000	Weak transcription	Osteobl	bone
17	chr4:26642600-26662200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr4:26642600-26662800	Weak transcription	Fetal Kidney	kidney
19	chr4:26642800-26680000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:26642800-26680800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr4:26643000-26662200	Weak transcription	Primary T cells from cord blood	blood
22	chr4:26643400-26662000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr4:26644600-26662200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr4:26650000-26661800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:26656200-26662200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr4:26656800-26679200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr4:26657400-26662000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:26657400-26662400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:26657400-26662600	Weak transcription	Brain Anterior Caudate	brain
30	chr4:26657400-26663200	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr4:26657400-26665000	Weak transcription	Brain Substantia Nigra	brain
32	chr4:26657600-26662000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr4:26657600-26662000	Weak transcription	Aorta	Aorta
34	chr4:26657600-26662000	Weak transcription	Fetal Brain Female	brain
35	chr4:26657600-26662000	Weak transcription	Fetal Muscle Trunk	muscle
36	chr4:26657600-26662000	Weak transcription	Thymus	Thymus
37	chr4:26657600-26662200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr4:26657600-26662200	Weak transcription	Adipose Nuclei	Adipose
39	chr4:26657600-26662200	Weak transcription	Ovary	ovary
40	chr4:26657600-26662600	Weak transcription	Lung	lung
41	chr4:26657600-26664600	Weak transcription	Brain Angular Gyrus	brain
42	chr4:26657600-26664800	Weak transcription	Spleen	Spleen
43	chr4:26657600-26665000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr4:26657600-26666400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr4:26657600-26676800	Weak transcription	Pancreas	Pancrea
46	chr4:26657600-26678400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:26657600-26679200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr4:26657600-26680600	Weak transcription	Brain Hippocampus Middle	brain
49	chr4:26657800-26678600	Weak transcription	Fetal Lung	lung
50	chr4:26658400-26679800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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