Variant report

Variant	rs7670323
Chromosome Location	chr4:26705966-26705967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10014273	1.00[ASN][1000 genomes]
rs10031954	1.00[ASN][1000 genomes]
rs10470786	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10805265	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10939130	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11737510	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13117759	1.00[ASN][1000 genomes]
rs13353547	1.00[ASN][1000 genomes]
rs1387541	0.81[ASN][1000 genomes]
rs1641558	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1641560	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1641561	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs166353	0.80[AMR][1000 genomes]
rs1686374	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1686383	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16878551	0.87[ASN][1000 genomes]
rs1994551	0.80[ASN][1000 genomes]
rs2309411	0.80[ASN][1000 genomes]
rs2309414	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs260941	0.87[ASN][1000 genomes]
rs260942	0.87[ASN][1000 genomes]
rs260944	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs260947	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs260951	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs260954	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs260955	0.87[ASN][1000 genomes]
rs28420370	0.81[ASN][1000 genomes]
rs28474372	0.81[ASN][1000 genomes]
rs4235020	1.00[ASN][1000 genomes]
rs4416469	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6831895	1.00[ASN][1000 genomes]
rs6833757	0.95[ASN][1000 genomes]
rs6857426	0.81[ASN][1000 genomes]
rs73114606	0.80[ASN][1000 genomes]
rs73114608	0.83[ASN][1000 genomes]
rs7656543	0.81[ASN][1000 genomes]
rs7672066	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690923	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997756	1.00[ASN][1000 genomes]
rs9997999	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1822380	chr4:26690284-26726780	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26666800-26732200	Weak transcription	Aorta	Aorta
2	chr4:26681400-26732400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:26681800-26718600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:26681800-26724400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:26684400-26732400	Weak transcription	Fetal Kidney	kidney
6	chr4:26687000-26727000	Weak transcription	Left Ventricle	heart
7	chr4:26692200-26712200	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:26692400-26726400	Weak transcription	Ovary	ovary
9	chr4:26693000-26711000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:26693000-26716000	Weak transcription	HSMM	muscle
11	chr4:26694200-26709600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:26694400-26718600	Weak transcription	Osteobl	bone
13	chr4:26694600-26711600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:26696200-26718800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:26696200-26726400	Weak transcription	Thymus	Thymus
16	chr4:26696200-26775400	Weak transcription	Brain Germinal Matrix	brain
17	chr4:26696400-26710600	Weak transcription	Fetal Thymus	thymus
18	chr4:26696400-26718600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:26696400-26726600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:26703400-26711000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:26703800-26715200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr4:26703800-26718600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:26703800-26718600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:26703800-26718800	Weak transcription	NH-A	brain
25	chr4:26704200-26711000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:26704600-26718600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:26705400-26753200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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