Variant report

Variant	rs7685499
Chromosome Location	chr4:26460111-26460112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10008576	1.00[EUR][1000 genomes]
rs10025586	1.00[EUR][1000 genomes]
rs1027153	1.00[EUR][1000 genomes]
rs11937874	1.00[EUR][1000 genomes]
rs11944695	1.00[EUR][1000 genomes]
rs16878313	1.00[EUR][1000 genomes]
rs28766106	1.00[EUR][1000 genomes]
rs6842481	1.00[EUR][1000 genomes]
rs73110909	1.00[EUR][1000 genomes]
rs73114618	1.00[EUR][1000 genomes]
rs73810925	1.00[EUR][1000 genomes]
rs7667400	1.00[EUR][1000 genomes]
rs7674106	1.00[EUR][1000 genomes]
rs7689000	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878767	chr4:26451326-26463490	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv10468	chr4:26453879-26462957	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2757048	chr4:26456267-26461885	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv2759237	chr4:26456267-26461885	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv261221	chr4:26460104-26460113	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26445000-26461000	Weak transcription	HSMM	muscle
2	chr4:26454800-26460800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:26457400-26461200	Enhancers	Colon Smooth Muscle	Colon
4	chr4:26458000-26461200	Enhancers	Fetal Muscle Leg	muscle
5	chr4:26458000-26466000	Enhancers	Fetal Stomach	stomach
6	chr4:26458400-26461400	Enhancers	Primary hematopoietic stem cells	blood
7	chr4:26458600-26461200	Enhancers	Primary T cells from cord blood	blood
8	chr4:26458600-26462000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:26458800-26461000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:26458800-26461800	Enhancers	Fetal Thymus	thymus
11	chr4:26459000-26460400	Enhancers	Fetal Lung	lung
12	chr4:26459000-26460400	Enhancers	Dnd41	blood
13	chr4:26459000-26460800	Enhancers	Stomach Smooth Muscle	stomach
14	chr4:26459000-26462000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:26459200-26460200	Enhancers	Thymus	Thymus
16	chr4:26459200-26461000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr4:26459200-26461000	Enhancers	Osteobl	bone
18	chr4:26459400-26460400	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr4:26459400-26460400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:26459400-26460800	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr4:26459400-26461200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr4:26459400-26462000	Enhancers	Rectal Smooth Muscle	rectum
23	chr4:26459600-26460400	Enhancers	NH-A	brain
24	chr4:26459600-26461000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
25	chr4:26459600-26461000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr4:26459600-26461000	Enhancers	Muscle Satellite Cultured Cells	--
27	chr4:26459600-26461200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr4:26459800-26460200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr4:26459800-26460200	Enhancers	HSMMtube	muscle
30	chr4:26459800-26460800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr4:26460000-26460200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr4:26460000-26460400	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr4:26460000-26460400	Enhancers	Fetal Heart	heart
34	chr4:26460000-26460800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr4:26460000-26461200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr4:26460000-26461400	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links