Variant report

Variant	rs28483913
Chromosome Location	chr7:41096823-41096824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10085594	0.95[EUR][1000 genomes]
rs10085715	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17171811	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2329909	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4720397	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4724019	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6462999	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6463000	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6960003	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73319565	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41088400-41099000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:41090200-41097000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:41091400-41097800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:41092200-41098800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:41095000-41100200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:41095200-41100000	Weak transcription	Aorta	Aorta
7	chr7:41095600-41100600	Weak transcription	HSMM	muscle
8	chr7:41096000-41097800	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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