Variant report

Variant	rs17171811
Chromosome Location	chr7:41109211-41109212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10085594	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10085715	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10225807	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10254530	1.00[CHB][hapmap]
rs2329909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28483913	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4720397	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4724019	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6462999	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6463000	0.93[EUR][1000 genomes]
rs6960003	0.93[EUR][1000 genomes]
rs73319565	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41101000-41113000	Weak transcription	Aorta	Aorta
2	chr7:41101000-41117800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:41106000-41111000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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