Variant report

Variant	rs10254530
Chromosome Location	chr7:41085025-41085026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10216075	0.89[AFR][1000 genomes]
rs10225807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10249061	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10273137	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57495174	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41083400-41085200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:41083800-41092000	Weak transcription	Aorta	Aorta
3	chr7:41084800-41086000	Enhancers	NHEK	skin
4	chr7:41084800-41086400	Enhancers	HMEC	breast
5	chr7:41084800-41087000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:41084800-41088000	Enhancers	Left Ventricle	heart
7	chr7:41084800-41088400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:41085000-41088000	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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